View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18077_low_24 (Length: 378)

Name: NF18077_low_24
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18077_low_24
NF18077_low_24
[»] chr4 (14 HSPs)
chr4 (1-351)||(7000993-7001343)
chr4 (26-351)||(7044270-7044600)
chr4 (5-228)||(7011207-7011432)
chr4 (17-210)||(7037658-7037853)
chr4 (26-197)||(7018884-7019055)
chr4 (48-183)||(7051525-7051660)
chr4 (26-187)||(6992541-6992702)
chr4 (26-210)||(7025837-7026023)
chr4 (249-357)||(6992187-6992295)
chr4 (256-362)||(7018006-7018113)
chr4 (256-351)||(7025278-7025373)
chr4 (240-351)||(7009980-7010089)
chr4 (256-351)||(7051262-7051357)
chr4 (274-351)||(7036604-7036681)
[»] chr3 (1 HSPs)
chr3 (26-140)||(46185215-46185329)


Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 7001343 - 7000993
Alignment:
Q  1 aaacaataaagttgtaatttaaaatttacctatttgatagaaaagggcagaaaaagaagaacaaccaggaccaccagataaccaaagcataagaggatct 100  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7001343 aaacaataaagttgtaatttgaaaattacctatttgatagaaaagggcagaaaaagaagaacaaccaggacctccagataaccaaagcataagaggatct 7001244  T
Q  101 ttctgaggattattttctgacttaacaaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatcaaatttatgacacaact 200  Q
    |||||||||||| ||||||| || ||||||||||||||||||||||||||||||| || ||| |||||||| |||||||||||||||||||||| |||||    
T  7001243 ttctgaggattactttctgatttgacaaaataatagaacacttgcatgtcatcatttgcttctcctaaccctacgtacctatcaaatttatgacccaact 7001144  T
Q  201 acattacttgctacaatgcacccccattgcaggaggtgaaaatgaaacaaaatatggaatgattaggattggtctcaccccgtttcaagttcaaaaggaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  7001143 acattacttgctacaatgcacccccattgcaggaggtgaaaatgaaacaaaatatggaatgattaggattgctctcaccctgtttcaagttcaaaaggaa 7001044  T
Q  301 gaggcccttgaaaaccaggaagatgttcaacctttgagccataagcttcaa 351  Q
    | || ||||||||||||||||| ||||||||||||||||||||||||||||    
T  7001043 gtggaccttgaaaaccaggaagctgttcaacctttgagccataagcttcaa 7000993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 26 - 351
Target Start/End: Complemental strand, 7044600 - 7044270
Alignment:
Q  26 ttacctatttgatagaaaagggcagaaaaagaagaacaaccaggaccaccagataaccaaagcataagaggatctttctgaggattattttctgacttaa 125  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| || |    
T  7044600 ttacctatttgataggcaagggcagaaaaagaagaacaaccaggaccaccagatatccaaagcataagagggtctttcttaggattattttctgatttga 7044501  T
Q  126 caaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatcaa---atttatg---acacaactacattacttgctacaatgc 219  Q
    |||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||   || ||||   | |||| |||||||||||||||| ||     
T  7044500 caaaataatagaacacttgcatgtcatcatttgcttctcctaaccccacgtacctatcaaaatatatatgaacatacaaatacattacttgctacactgt 7044401  T
Q  220 acccccatt-gcaggaggtgaaaatgaaacaaaatatggaatgattaggattggtctcaccccgtttcaagttcaaaaggaagaggcccttgaaaaccag 318  Q
    |||||||||  |||||||||||||||||| |||||||||||||||||  ||||  || |||| |||||||||||||| |||||||| |||||||||||||    
T  7044400 acccccattaacaggaggtgaaaatgaaataaaatatggaatgattaaaattg--ctgaccctgtttcaagttcaaatggaagaggtccttgaaaaccag 7044303  T
Q  319 gaagatgttcaacctttgagccataagcttcaa 351  Q
    ||||||||||||||||||||| | |||||||||    
T  7044302 gaagatgttcaacctttgagcgagaagcttcaa 7044270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 7011432 - 7011207
Alignment:
Q  5 aataaagttgtaatttaaaatttacctatttgatagaaaagggcagaaaaagaagaacaaccaggaccaccagataaccaaagcataagaggatctttct 104  Q
    |||||| ||||||||| ||| |||||||||||||||| |||| |||||| |||||| |||||||||||||||| || |||||||||||||||||||||||    
T  7011432 aataaatttgtaatttgaaaattacctatttgatagagaaggccagaaatagaagagcaaccaggaccaccagttatccaaagcataagaggatctttct 7011333  T
Q  105 gaggattattttctgacttaacaaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatcaaatttatgacac--aactac 202  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||| || ||| |||||||| ||||||||||||||||||||||||  || |||    
T  7011332 gaggattactttctgactttacaaaataatagaacacttgcatgtcatcatttgcttctcctaaccctacgtacctatcaaatttatgacacataattac 7011233  T
Q  203 attacttgctacaatgcacccccatt 228  Q
    ||||||||||||| ||||||||||||    
T  7011232 attacttgctacactgcacccccatt 7011207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 7037853 - 7037658
Alignment:
Q  17 atttaaaatttacctatttgatagaaaagggcagaaaaagaagaacaaccaggaccaccagataaccaaagcataagaggatctttctgaggattatttt 116  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  7037853 atttaaaaattacctatttgatagacaaggccagaaaaagaagaacaaccaggaccaccagttaaccaaagcataagagggtctttctgaggattatttt 7037754  T
Q  117 ctgacttaacaaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatcaaatttatga--cacaactacattacttg 210  Q
    ||||||| | ||||||||||||||||||||||||||||| || ||| || |||||||| ||||||||||||||||||  |||||||||||||||||    
T  7037753 ctgacttgataaaataatagaacacttgcatgtcatcatttgattctcccaaccccacatacctatcaaatttatgacacacaactacattacttg 7037658  T

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Target: chr4; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 7019055 - 7018884
Alignment:
Q  26 ttacctatttgatagaaaagggcagaaaaagaagaacaaccaggaccaccagataaccaaagcataagaggatctttctgaggattattttctgacttaa 125  Q
    ||||||||||||| |  |||| |||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||| |    
T  7019055 ttacctatttgatgggcaaggccagaaaaagaagaacaaccaggaccaccagataaccaaagaattagagggtctttttgaggattattttctgacttta 7018956  T
Q  126 caaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatcaaatttatgacaca 197  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7018955 caaaataataaaacacttgcatgtcatcatctgtttcccctaatcccacgtacctatcaaatttatgacaca 7018884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 48 - 183
Target Start/End: Complemental strand, 7051660 - 7051525
Alignment:
Q  48 cagaaaaagaagaacaaccaggaccaccagataaccaaagcataagaggatctttctgaggattattttctgacttaacaaaataatagaacacttgcat 147  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7051660 cagaaaaagaagaacagccaggaccaccagataaccaaagcataagaggatctttctgaggattattttctgacttaacaaaataatagaacacttgcat 7051561  T
Q  148 gtcatcatctgtttcccctaaccccacgtacctatc 183  Q
    ||| |||||||||||||||||||||| |||||||||    
T  7051560 gtcgtcatctgtttcccctaaccccaagtacctatc 7051525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 26 - 187
Target Start/End: Complemental strand, 6992702 - 6992541
Alignment:
Q  26 ttacctatttgatagaaaagggcagaaaaagaagaacaaccaggaccaccagataaccaaagcataagaggatctttctgaggattattttctgacttaa 125  Q
    |||||||||||||||  |||| |||||||||||||||| ||||||||||||| |||||||||||||||||| ||||| |||||||  |||||||| || |    
T  6992702 ttacctatttgataggcaaggccagaaaaagaagaacagccaggaccaccagttaaccaaagcataagagggtctttttgaggatcgttttctgatttga 6992603  T
Q  126 caaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatcaaat 187  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6992602 taaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatcaaat 6992541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 26 - 210
Target Start/End: Complemental strand, 7026023 - 7025837
Alignment:
Q  26 ttacctatttgatagaaaagggcagaaaaagaagaacaaccaggaccaccagataaccaaagcataagaggatctttctgaggattattttctgacttaa 125  Q
    |||||||||| ||| | |||  |||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |    
T  7026023 ttacctatttcatacacaagtccagaaaaagaagaacagccaggaccaccagttaaccaaagcataagagggtctttctgaggattattttctgacttta 7025924  T
Q  126 caaaataatagaacacttgcatgtcatcatctgtttcccctaaccccacgtacctatcaaatttatg--acacaactacattacttg 210  Q
    ||||||| || ||||||||||||||||||| ||  || |||||||||||||||||||||||| ||||  ||||| ||||||||||||    
T  7025923 caaaatagtaaaacacttgcatgtcatcatttgaatctcctaaccccacgtacctatcaaatatatgatacacagctacattacttg 7025837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 249 - 357
Target Start/End: Complemental strand, 6992295 - 6992187
Alignment:
Q  249 aaaatatggaatgattaggattggtctcaccccgtttcaagttcaaaaggaagaggcccttgaaaaccaggaagatgttcaacctttgagccataagctt 348  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6992295 aaaatatggaatgattaagattgctctcacccagtttcaagttcaaaaggaagaggtccttgaaaaccaggaagatgttcaacctttgagccataagctt 6992196  T
Q  349 caatgtgag 357  Q
    |||| ||||    
T  6992195 caatatgag 6992187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 256 - 362
Target Start/End: Complemental strand, 7018113 - 7018006
Alignment:
Q  256 ggaatgattaggattggtctcaccccgtttcaagttcaaaaggaagaggcccttg-aaaaccaggaagatgttcaacctttgagccataagcttcaatgt 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  7018113 ggaatgattaggattggtctcaccccgtttcaagttcaaaaggaagtggtccttgaaaaaccaggaagctgttcaacctttgagccataagcttcaatgt 7018014  T
Q  355 gagataat 362  Q
    ||||||||    
T  7018013 gagataat 7018006  T

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Target: chr4; HSP #11
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 256 - 351
Target Start/End: Complemental strand, 7025373 - 7025278
Alignment:
Q  256 ggaatgattaggattggtctcaccccgtttcaagttcaaaaggaagaggcccttgaaaaccaggaagatgttcaacctttgagccataagcttcaa 351  Q
    ||||||||||||||||  ||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7025373 ggaatgattaggattgccctcaccccgtttcaagttcaaaagggagtggcccttgaaaaccaggaaggtgttcaacctttgagccataagcttcaa 7025278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 240 - 351
Target Start/End: Complemental strand, 7010089 - 7009980
Alignment:
Q  240 aaatgaaacaaaatatggaatgattaggattggtctcaccccgtttcaagttcaaaaggaagaggcccttgaaaaccaggaagatgttcaacctttgagc 339  Q
    |||||||| |||| |||||||||||| ||||   || |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7010089 aaatgaaataaaaaatggaatgattaagatta--ctgacccagtttcaagttcaaaaggaagtggcccttgaaaaccaggaagatgttcaacctttgagc 7009992  T
Q  340 cataagcttcaa 351  Q
    ||||||||||||    
T  7009991 cataagcttcaa 7009980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 256 - 351
Target Start/End: Complemental strand, 7051357 - 7051262
Alignment:
Q  256 ggaatgattaggattggtctcaccccgtttcaagttcaaaaggaagaggcccttgaaaaccaggaagatgttcaacctttgagccataagcttcaa 351  Q
    ||||||||||||||||  ||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||  |||||||| |||||||||    
T  7051357 ggaatgattaggattgccctcaccccgtttcaagttcaaaagggagcggcccttgaaaaccaggaaggtgttcaactcttgagccagaagcttcaa 7051262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 274 - 351
Target Start/End: Complemental strand, 7036681 - 7036604
Alignment:
Q  274 ctcaccccgtttcaagttcaaaaggaagaggcccttgaaaaccaggaagatgttcaacctttgagccataagcttcaa 351  Q
    ||||||| |||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  7036681 ctcaccctgtttcaagttgaaaaggaagaggtccttgaaaaccaggaaggtgttcaacctttgagccataagcttcaa 7036604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 46185215 - 46185329
Alignment:
Q  26 ttacctatttgatagaaaagggcagaaaaagaagaacaaccaggaccaccagataaccaaagcataagaggatctttctgaggattattttctgacttaa 125  Q
    |||||||||| | ||  |||| ||||||||| ||| |||||||||||||||| |||||||||||  ||||||||||  | ||||||||| || ||||  |    
T  46185215 ttacctatttcaaaggcaaggccagaaaaagcagagcaaccaggaccaccagttaaccaaagcaagagaggatcttgtttaggattattctcagactcta 46185314  T
Q  126 caaaataatagaaca 140  Q
     |||||| |||||||    
T  46185315 aaaaatagtagaaca 46185329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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