View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18077_low_28 (Length: 351)
Name: NF18077_low_28
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 9 - 332
Target Start/End: Complemental strand, 40645175 - 40644849
Alignment:
| Q |
9 |
gattatactgctaaaaaagatgaaggatatcatgttacattagaag---ttgatgaaactactccctcatcatcggaacataattatcaaggggaaacca |
105 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
40645175 |
gattacactgctaaaaaagatgaaggatatcatgttacattagaagaagttgatgaaactactccctcattattggaacataattatcaaggggaaacca |
40645076 |
T |
|
| Q |
106 |
aaattccaaatccaaatattccacatgcgcgagctttacacgatggattaaaattctacaaaattcctgagtgcctatttgcagatcttatccttagttt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40645075 |
aaattccaaatccaaatattccacatgcgcgagctttacacgatggattaaaattctacaaaattcctgagtgcctatttgcagatctcatccttagttt |
40644976 |
T |
|
| Q |
206 |
tcaagaccacaaaaccagccaattattttttcagaacatggattgggaacatgcttttgaagtaattgcagttgagctaggattggtgtatgatatgcta |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40644975 |
tcaagaccacaaaaccagccaattattttttcagaacatggattgggaacatgcttttgaagtaattgcagttgagctaggattggtgtatgatatgcta |
40644876 |
T |
|
| Q |
306 |
tatacaaaggcagtgttaacatactcc |
332 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
40644875 |
tatacaaaggcagtgttaacatactcc |
40644849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 9 - 333
Target Start/End: Complemental strand, 40653857 - 40653530
Alignment:
| Q |
9 |
gattatactgctaaaaaagatgaaggatatcatgttacattagaag---ttgatgaaactactccctcatcatcggaacataattatcaaggggaaacca |
105 |
Q |
| |
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||||| |||||||||||||| ||||| ||||||||||| ||||| | || ||||||||||||||| | || ||| | ||||| |||||||| ||||| |
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| T |
40653857 |
gattacactgctaaaaaagaagaagggtatcatgttaccttagatgaaattaatgaaactactcccttagtattggatcctaattctcaagggggaacca |
40653758 |
T |
|
| Q |
106 |
aaattccaaatccaaatattccacatgcgcgagctttacacgatggattaaaattctacaaaattcctgagtgcctatttgcagatcttatccttagttt |
205 |
Q |
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|||| |||||| |||| |||||| || | |||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| ||| | ||||| |
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| T |
40653757 |
aaataccaaatacaaaaattccagattgtcaagctttacgtgatggattcaaattctacaacattcctgagtgcctatttgcagatctcatcttcagttt |
40653658 |
T |
|
| Q |
206 |
tcaagaccacaaaaccagccaattattttttcagaacatggattgggaacatgcttttgaagtaattgcagttgagctaggattggtgtatgatatgcta |
305 |
Q |
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|||||||||||||| |||||||| |||||||| | | ||| || |||||||| ||| ||||| |||||||||||||| | |||||||| || |
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| T |
40653657 |
tcaagaccacaaaagcagccaatatttttttcaagattctaactggaaagatgcttttaaagcaattgaggttgagctaggattaatatatgatatttta |
40653558 |
T |
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| Q |
306 |
tatacaaaggcagtgttaacatactcct |
333 |
Q |
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||||||||||||||| ||||||| |||| |
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| T |
40653557 |
tatacaaaggcagtgataacatattcct |
40653530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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