View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18077_low_3 (Length: 630)
Name: NF18077_low_3
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 112 - 307
Target Start/End: Complemental strand, 2115002 - 2114807
Alignment:
| Q |
112 |
ccaattaatagtgacttacttgaaaattataggtgtgagtagtaaggagaaaaggaagcacagaagtagaagatggagaagcttgacaaaaactttttta |
211 |
Q |
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| T |
2115002 |
ccaattaatagtgacttacttgaaaattataggtgtgagtagtaaggagaaaaggaagcacagaagtagaagatggagaagcttgacaaaaactttttta |
2114903 |
T |
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| Q |
212 |
gatgttcgtatatagattcgtagaagaggtatgtgatgcaattttattctttatatggaaagaccgaagagctttaggacaaaggtcactaccaca |
307 |
Q |
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| T |
2114902 |
gatgttcgtatatagattcgtagaagaggtatgtgatgcaattttattctttatatggaaagaccgaagagctttaggacaaaggtcactaccaca |
2114807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 340 - 463
Target Start/End: Complemental strand, 2114774 - 2114652
Alignment:
| Q |
340 |
gggtatccaataaaaaatgagaggtaataagtgtttttgtcaccaaaaactattaaaatg-nnnnnnnnactaagaataaactattaagtttttgacaaa |
438 |
Q |
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| T |
2114774 |
gggtatccaataaaaagtgagaggtaataagtgtttttgtcaccaaaaactattaaaatgttttttttgactaagaat-aactattaagtttttgacaaa |
2114676 |
T |
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| Q |
439 |
agataactattaattagttcttgac |
463 |
Q |
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| T |
2114675 |
agataactattgatta-ttcttgac |
2114652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 2115102 - 2115067
Alignment:
| Q |
12 |
caaagggaacaaaaattgactaatatggtgggttga |
47 |
Q |
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| T |
2115102 |
caaagggaacaaaaattgactaatatggtgggttga |
2115067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 559 - 615
Target Start/End: Complemental strand, 2114545 - 2114489
Alignment:
| Q |
559 |
cacattaactgtcccatgagcataactcagttgacagaacaaaacattattatatgt |
615 |
Q |
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| T |
2114545 |
cacattaactgtcccgtgagcatagctcagttggtagaacaatgcattattatatgt |
2114489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 570 - 614
Target Start/End: Original strand, 20533753 - 20533797
Alignment:
| Q |
570 |
tcccatgagcataactcagttgacagaacaaaacattattatatg |
614 |
Q |
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| T |
20533753 |
tcccatgagcatagctcagttggtagaacaaaacattattatatg |
20533797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 569 - 613
Target Start/End: Complemental strand, 35049249 - 35049205
Alignment:
| Q |
569 |
gtcccatgagcataactcagttgacagaacaaaacattattatat |
613 |
Q |
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| T |
35049249 |
gtcccatgagcataactcagttggtagaacaatgcattattatat |
35049205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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