View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18077_low_30 (Length: 336)
Name: NF18077_low_30
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 120 - 326
Target Start/End: Original strand, 26958753 - 26958959
Alignment:
| Q |
120 |
gaaaacaattttagtgattagacaaacctatgaagagaatgataatgaggacagtgataagccaaaaagggaaaacaacactgagagtaacaccaacagt |
219 |
Q |
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| T |
26958753 |
gaaaacagttctagtgattagaccaacctatgaagagaatgataatgaggacagtgataagccaaaaagggaaaacaacactgagagtaacaccaacagt |
26958852 |
T |
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| Q |
220 |
aatcccaagcataagcattggctgaaacaaaagagccaaatcatagtctaatattggcacttgttttgttggatgagccactctcaaattataccaaact |
319 |
Q |
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| T |
26958853 |
aatcccaagcataagcattggctgaaacaaaagagccaaatcatagtctaatattggcacttgttttgttggatgagccactctcaaattataccaaact |
26958952 |
T |
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| Q |
320 |
gatgatg |
326 |
Q |
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| T |
26958953 |
gatgatg |
26958959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 26958652 - 26958684
Alignment:
| Q |
19 |
ctttgaagaatgaccttaaagaagttcctgcac |
51 |
Q |
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| T |
26958652 |
ctttgaagaatgaccttaaagaagttcctgcac |
26958684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 141 - 295
Target Start/End: Complemental strand, 41775547 - 41775393
Alignment:
| Q |
141 |
acaaacctatgaagagaatgataatgaggacagtgataagccaaaaagggaaaacaacactgagagtaacaccaacagtaatcccaagcataagcattgg |
240 |
Q |
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| T |
41775547 |
acaaacctatgaagagaataatgataaggacagtgatgagccagtaagggaaaacaacactaagagcaacaccaacagtgataccaagcataagcatagg |
41775448 |
T |
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| Q |
241 |
ctgaaacaaaagagccaaatcatagtctaatattggcacttgttttgttggatga |
295 |
Q |
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| T |
41775447 |
ttgaaaaagaagagctagatcataatccaatattggaacatcttttgttggatga |
41775393 |
T |
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