View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18077_low_32 (Length: 330)
Name: NF18077_low_32
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_low_32 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 158 - 330
Target Start/End: Complemental strand, 42802142 - 42801970
Alignment:
| Q |
158 |
gtacatatgagttgatagctgtagaattggttagttgaatttttaatgtatggtaaatttaattgttaaattacatgatgaatgtttgtgaaatactagc |
257 |
Q |
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| T |
42802142 |
gtacatatgagttgatagctgtagaattggttagttgaatttttaatgtatggtaaatttaattgttaaattacatgatgaatgtttgtgaaatactagc |
42802043 |
T |
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| Q |
258 |
ataaaaggaatttttagcttatatttagannnnnnnnaatgaagaggataagcgtagaattgagaagaaatct |
330 |
Q |
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| T |
42802042 |
ataaaaggaatttttagcttatatttagattttttttaatgaagaggataagcgtagaattgagaagaaatct |
42801970 |
T |
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Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 42802288 - 42802207
Alignment:
| Q |
12 |
atgaagtgtgtcttcatttaaaagatgaagaagaataagacgacatttgtttgcgttgagtggcgcaaactatactcaaata |
93 |
Q |
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| T |
42802288 |
atgaagtgtgtcttcatttaaaagatgaagaagaataagacgacatttgtttgcgttgagtggcgcaaactatactcaaata |
42802207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 47740 - 47683
Alignment:
| Q |
33 |
aagatgaagaagaataagacgacatttgtttgcgttgagtggcgcaaactatactcaa |
90 |
Q |
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| T |
47740 |
aagaagaataagaataagacgacatttgtttgagttgagtggcgtaaactatactcaa |
47683 |
T |
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