View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18077_low_33 (Length: 327)
Name: NF18077_low_33
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 2747233 - 2747036
Alignment:
| Q |
1 |
ttttaatggttgcagttggtatctttgggtctttgtggtcatatttttgttgcttaatatcaatggtatgatacaaagacttggaacaatagaagtcaca |
100 |
Q |
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| T |
2747233 |
ttttaatggttgcagttggtatctttggatctttgtggtcatatttatgttgcttaatatcaatggtatgatacaaagacttggaacaatagaagtcaca |
2747134 |
T |
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| Q |
101 |
-ttatgtcattgtccaacaatcaaaattaagatttatgtttattgtttcaggttggcacacatacttttgggttgctttcattcctgtcattgtaagt |
197 |
Q |
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| T |
2747133 |
attatgtcattgtccaacaatcaaaattaagatttatgtttattgtttcaggttggcacacatacttttgggttgctttcattcctgtcattgtaagt |
2747036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 2755292 - 2755223
Alignment:
| Q |
1 |
ttttaatggttgcagttggtatctttgggtctttgtggtcatatttttgttgcttaatatcaatggtatg |
70 |
Q |
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| T |
2755292 |
ttttaatggttgcagttggtatctttggatctttgtggtcatatttttgttgcttaatgtcaatggtatg |
2755223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 84 - 197
Target Start/End: Complemental strand, 2754946 - 2754835
Alignment:
| Q |
84 |
gaacaatagaagtcac-attatgtcattgtccaacaatcaaaattaagatttatgtttattgtttcaggttggcacacatacttttgggttgctttcatt |
182 |
Q |
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| T |
2754946 |
gaacaatagaagtcacaattatgcaattttc---caatcaaaattaagatttctgttcatggtttcaggttggcacacatatttttggattgctttcatt |
2754850 |
T |
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| Q |
183 |
cctgtcattgtaagt |
197 |
Q |
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| T |
2754849 |
cctgtcattgtaagt |
2754835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 294
Target Start/End: Complemental strand, 2747017 - 2746970
Alignment:
| Q |
247 |
tgctttaaatagaataggtcatagatatttatcgaacgacctgaacta |
294 |
Q |
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|||||||||||||||||||||||||| ||| |||||| |||||||||| |
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| T |
2747017 |
tgctttaaatagaataggtcatagatctttgtcgaaccacctgaacta |
2746970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 55322487 - 55322556
Alignment:
| Q |
1 |
ttttaatggttgcagttggtatctttgggtctttgtggtcatatttttgttgcttaatatcaatggtatg |
70 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||| || |||||| | ||||||||||||||| |
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| T |
55322487 |
ttttcatggttgcagttggtatctttggctctttgtggtcatcttcttgttgttaaatatcaatggtatg |
55322556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 27383629 - 27383556
Alignment:
| Q |
124 |
aattaagatttatgtttattgtttcaggttggcacacatacttttgggttgctttcattcctgtcattgtaagt |
197 |
Q |
| |
|
||||||||| | ||| ||||||| ||| |||||||||||| |||||| |||||||||||| ||||||||||||| |
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|
| T |
27383629 |
aattaagatgtttgtgtattgttccagattggcacacatatttttggtttgctttcattcatgtcattgtaagt |
27383556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 55323178 - 55323230
Alignment:
| Q |
145 |
tttcaggttggcacacatacttttgggttgctttcattcctgtcattgtaagt |
197 |
Q |
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||||||||||||| ||||| || ||| |||||||| ||||||| ||||||||| |
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| T |
55323178 |
tttcaggttggcatacatatttctggattgctttcgttcctgttattgtaagt |
55323230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 1094688 - 1094745
Alignment:
| Q |
140 |
tattgtttcaggttggcacacatacttttgggttgctttcattcctgtcattgtaagt |
197 |
Q |
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||||||| ||| ||||||| |||| |||||| |||| ||||||| ||||||||||||| |
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| T |
1094688 |
tattgttccagattggcacgcatatttttggtttgcattcattcatgtcattgtaagt |
1094745 |
T |
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