View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18077_low_34 (Length: 325)
Name: NF18077_low_34
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 53466023 - 53466334
Alignment:
| Q |
1 |
taagcatggcaatatatctatattgttgaaatctgagatgttgtttaagagatcgtatagcttctgataaaatcaatgtacagcaagtactgtaagtttg |
100 |
Q |
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| T |
53466023 |
taagcatggcaatatatctatattgttgaaatctgagatgttgtttaagagatcgtatagcttctgataaaatcaatgtacagcaaatactgtaagtttg |
53466122 |
T |
|
| Q |
101 |
tta--ctatatgat-aaaaaaccaggttatattccttaggctaagtaggttatgataaaaattccatgcaacgttttaaggatttccaatactagctagc |
197 |
Q |
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||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
53466123 |
ttactctatatgataaaaaaaccaggttatattccttaggctaagtaggttatgataaaaattccatgcaaggttttaaggatttccaata----ctagc |
53466218 |
T |
|
| Q |
198 |
tagaatgtgtgagttgagcaatgagcgatacttaaatgaggagatgtatatataccttgccctttaatannnnnnnngtaaacatggtgtccaaaaccac |
297 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
53466219 |
tagaatatgtgtgttgagcaatgagcgatacttaaatgaggagatgtatatat--cttgccctttaata--ttttttgtaaacatggtgtccaaaaccac |
53466314 |
T |
|
| Q |
298 |
gtatatgttataatattcct |
317 |
Q |
| |
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|||||||||||||||||||| |
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| T |
53466315 |
gtatatgttataatattcct |
53466334 |
T |
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