View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18077_low_35 (Length: 324)
Name: NF18077_low_35
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 202 - 319
Target Start/End: Original strand, 21075154 - 21075271
Alignment:
| Q |
202 |
ttgtggtaacaaatataagggtttatttaagttttattatggtagaaccttttgggatggtttgtagttaactctagcgtgttttgctctgccactgtgt |
301 |
Q |
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| T |
21075154 |
ttgtggtaacaaatataagggtttatttaagttttattatggtagaatcttttgggacggtttgtagttaactctagcgtgttttgatctgccagtgtgt |
21075253 |
T |
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| Q |
302 |
tctcctctctgtgctgct |
319 |
Q |
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| T |
21075254 |
tctcctctctgtgctgct |
21075271 |
T |
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Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 21075009 - 21075100
Alignment:
| Q |
49 |
ctatcctttattataagatctattataatatcattgtgttcgtttataagatttaaaccatgttttgcaaccctttgttatagcgctaaaaa |
140 |
Q |
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| T |
21075009 |
ctatcctttattataagatctattataatataattgtgttcgtttataagatttgaaccatgttttgcaaccctttgttatagcgctaaaaa |
21075100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 197 - 295
Target Start/End: Original strand, 21021319 - 21021417
Alignment:
| Q |
197 |
cttgcttgtggtaacaaatataagggtttatttaagttttattatggtagaaccttttgggatggtttgtagttaactctagcgtgttttgctctgcca |
295 |
Q |
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| T |
21021319 |
cttgcttgtggtaacaaatatataggtttatttaagtcttattatagtagaaccttttggggcggtttgtaatgaactccatcgtgttttgctctgcca |
21021417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 57 - 140
Target Start/End: Original strand, 21021179 - 21021262
Alignment:
| Q |
57 |
tattataagatctattataatatcattgtgttcgtttataagatttaaaccatgttttgcaaccctttgttatagcgctaaaaa |
140 |
Q |
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| T |
21021179 |
tattataagatctattataatataactgtgttcgtttataagatttgaaccgtgttttgcaaaccattgttgtagcgctaaaaa |
21021262 |
T |
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