View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18077_low_38 (Length: 312)

Name: NF18077_low_38
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18077_low_38
NF18077_low_38
[»] chr7 (26 HSPs)
chr7 (36-296)||(46897702-46897963)
chr7 (36-115)||(5801114-5801193)
chr7 (36-115)||(44434752-44434831)
chr7 (40-113)||(24688861-24688934)
chr7 (36-115)||(24162244-24162323)
chr7 (1-36)||(35752033-35752068)
chr7 (2-37)||(37128076-37128111)
chr7 (36-115)||(11485899-11485979)
chr7 (1-33)||(39453484-39453516)
chr7 (1-36)||(7876327-7876362)
chr7 (36-115)||(10282550-10282629)
chr7 (2-37)||(24228680-24228715)
chr7 (1-36)||(24923023-24923058)
chr7 (1-36)||(39323745-39323780)
chr7 (1-36)||(46817420-46817455)
chr7 (36-66)||(24689332-24689362)
chr7 (2-36)||(33455226-33455260)
chr7 (36-66)||(35525898-35525928)
chr7 (1-35)||(43489356-43489390)
chr7 (2-35)||(36816845-36816878)
chr7 (39-115)||(1644478-1644553)
chr7 (3-35)||(26371189-26371221)
chr7 (83-115)||(28974886-28974918)
chr7 (3-35)||(31429475-31429507)
chr7 (1-37)||(35328067-35328103)
chr7 (36-68)||(35526468-35526500)
[»] chr8 (25 HSPs)
chr8 (39-115)||(5765443-5765519)
chr8 (36-115)||(35308207-35308286)
chr8 (38-115)||(6007616-6007693)
chr8 (38-115)||(15199674-15199751)
chr8 (36-100)||(27917495-27917559)
chr8 (36-100)||(27963914-27963978)
chr8 (36-115)||(5764825-5764904)
chr8 (36-115)||(40796250-40796329)
chr8 (38-115)||(6007973-6008050)
chr8 (36-113)||(28828101-28828178)
chr8 (3-35)||(117329-117361)
chr8 (1-37)||(9509398-9509434)
chr8 (36-100)||(27881272-27881336)
chr8 (36-100)||(28021453-28021517)
chr8 (36-115)||(5424715-5424794)
chr8 (1-35)||(2379277-2379311)
chr8 (1-35)||(9713823-9713857)
chr8 (1-35)||(31940451-31940485)
chr8 (1-35)||(40458772-40458806)
chr8 (36-113)||(17073233-17073310)
chr8 (36-113)||(17574960-17575037)
chr8 (85-113)||(1580218-1580246)
chr8 (2-30)||(4975412-4975440)
chr8 (36-104)||(13916488-13916556)
chr8 (1-29)||(40649837-40649865)
[»] chr5 (19 HSPs)
chr5 (38-115)||(4727928-4728005)
chr5 (36-113)||(35040476-35040553)
chr5 (1-36)||(5497410-5497445)
chr5 (36-115)||(12545957-12546036)
chr5 (1-36)||(13957807-13957842)
chr5 (36-115)||(35040099-35040178)
chr5 (40-115)||(35040929-35041004)
chr5 (1-35)||(14972115-14972149)
chr5 (1-35)||(19295867-19295901)
chr5 (1-34)||(9424593-9424626)
chr5 (3-35)||(27503518-27503550)
chr5 (1-36)||(6973200-6973235)
chr5 (5-36)||(23195247-23195278)
chr5 (36-115)||(28793947-28794025)
chr5 (36-115)||(35781313-35781392)
chr5 (1-36)||(38015513-38015548)
chr5 (1-35)||(9374502-9374536)
chr5 (3-35)||(3656568-3656600)
chr5 (74-114)||(6538139-6538179)
[»] chr3 (28 HSPs)
chr3 (36-112)||(26863090-26863166)
chr3 (231-295)||(41830001-41830065)
chr3 (38-115)||(3942643-3942718)
chr3 (39-115)||(8707963-8708039)
chr3 (39-115)||(9059850-9059926)
chr3 (39-115)||(54981672-54981748)
chr3 (39-115)||(54981833-54981908)
chr3 (3-46)||(51416108-51416151)
chr3 (1-36)||(55000177-55000212)
chr3 (1-35)||(38156632-38156666)
chr3 (1-35)||(52756067-52756101)
chr3 (36-113)||(24485657-24485734)
chr3 (36-115)||(23027849-23027929)
chr3 (3-35)||(47510940-47510972)
chr3 (36-115)||(54356213-54356293)
chr3 (36-115)||(7433663-7433742)
chr3 (1-36)||(25641783-25641818)
chr3 (1-36)||(42589967-42590002)
chr3 (1-36)||(48534006-48534041)
chr3 (1-36)||(54707219-54707254)
chr3 (39-113)||(10333048-10333122)
chr3 (36-66)||(21388483-21388513)
chr3 (1-35)||(37028860-37028894)
chr3 (2-36)||(40688450-40688484)
chr3 (2-35)||(24688252-24688285)
chr3 (3-36)||(31286792-31286825)
chr3 (3-36)||(44945934-44945967)
chr3 (1-33)||(45059020-45059052)
[»] chr1 (19 HSPs)
chr1 (36-115)||(47794663-47794742)
chr1 (36-115)||(49243722-49243801)
chr1 (38-115)||(6941297-6941375)
chr1 (36-113)||(6844408-6844485)
chr1 (39-115)||(47795506-47795582)
chr1 (39-115)||(47795879-47795955)
chr1 (36-115)||(24705300-24705379)
chr1 (39-115)||(17054170-17054246)
chr1 (36-115)||(24686136-24686215)
chr1 (1-35)||(2657440-2657474)
chr1 (1-35)||(41467632-41467666)
chr1 (1-35)||(41895164-41895198)
chr1 (2-36)||(42234977-42235011)
chr1 (2-34)||(6626025-6626057)
chr1 (1-32)||(32448776-32448807)
chr1 (36-66)||(6941670-6941700)
chr1 (36-66)||(11981705-11981735)
chr1 (36-66)||(45807973-45808003)
chr1 (1-35)||(46967041-46967075)
[»] chr2 (25 HSPs)
chr2 (36-115)||(21479152-21479233)
chr2 (39-115)||(31667457-31667533)
chr2 (39-115)||(41347374-41347450)
chr2 (1-45)||(13543614-13543658)
chr2 (1-36)||(34249401-34249436)
chr2 (36-115)||(40662819-40662897)
chr2 (36-114)||(21479352-21479430)
chr2 (1-35)||(29687177-29687211)
chr2 (1-35)||(35158050-35158084)
chr2 (38-115)||(42676410-42676487)
chr2 (1-33)||(145418-145450)
chr2 (38-113)||(3256049-3256124)
chr2 (1-36)||(3711769-3711804)
chr2 (1-35)||(4258625-4258659)
chr2 (36-66)||(7495578-7495608)
chr2 (1-35)||(19428426-19428460)
chr2 (2-36)||(27331439-27331473)
chr2 (1-35)||(28641292-28641326)
chr2 (36-66)||(42679488-42679518)
chr2 (1-35)||(43898971-43899005)
chr2 (3-36)||(2688728-2688761)
chr2 (2-35)||(39301197-39301230)
chr2 (36-113)||(43968628-43968705)
chr2 (1-33)||(3266423-3266455)
chr2 (3-35)||(40544085-40544117)
[»] scaffold0016 (2 HSPs)
scaffold0016 (39-115)||(205190-205266)
scaffold0016 (36-115)||(106141-106220)
[»] chr4 (19 HSPs)
chr4 (36-115)||(27839033-27839112)
chr4 (38-115)||(660113-660190)
chr4 (1-35)||(15060289-15060323)
chr4 (1-35)||(34552456-34552490)
chr4 (1-35)||(45633779-45633813)
chr4 (38-115)||(19298589-19298666)
chr4 (39-115)||(42816047-42816124)
chr4 (3-35)||(49014237-49014269)
chr4 (36-115)||(7238960-7239039)
chr4 (1-36)||(20351841-20351876)
chr4 (36-115)||(29100767-29100846)
chr4 (2-36)||(37239089-37239123)
chr4 (1-35)||(41632007-41632041)
chr4 (1-35)||(52688486-52688520)
chr4 (3-36)||(31881313-31881346)
chr4 (43-115)||(41103944-41104016)
chr4 (36-104)||(42314492-42314560)
chr4 (1-37)||(46708739-46708775)
chr4 (1-37)||(52461500-52461536)
[»] chr6 (8 HSPs)
chr6 (1-36)||(15965570-15965605)
chr6 (36-103)||(21980864-21980931)
chr6 (36-102)||(20469392-20469458)
chr6 (1-35)||(28948845-28948879)
chr6 (2-35)||(18661872-18661905)
chr6 (38-115)||(33438609-33438686)
chr6 (1-35)||(4487664-4487698)
chr6 (2-35)||(3786887-3786920)
[»] scaffold0721 (1 HSPs)
scaffold0721 (1-35)||(7228-7262)


Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 36 - 296
Target Start/End: Complemental strand, 46897963 - 46897702
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttcaaaa-gttggagactaaaact 134  Q
    |||||||||||||||||||||||||||||||||| | |||||||||  |||| |||||||||||||||||| ||||||||||| ||||||||||||||||    
T  46897963 tccaaacaaactagattatttgtttaaaaaatgctatatttatcacgaaaaataaacacaaaatagattctgatttttcaaaaagttggagactaaaact 46897864  T
Q  135 tctaagagataaatttggatttggagactaaaacttttcaaaagttgttacttcaatttttgcaacatgtagaatggttggatcagaattctaatggttt 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46897863 tctaagagataaatttggatttggagactaaaacttttcaaaagttgttacttcaatttttgcaacatgtagaatggttggatcagaattctaatggttt 46897764  T
Q  235 gaaggccttcaagttatcactaactcttgcatcatctccaatgcatctcttacctttgcatt 296  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46897763 gaaggtcttcaagttatcactaactcttgcatcatctccaatgcatctcttacctttgcatt 46897702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 5801114 - 5801193
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||| ||||||||||||||||| | ||  ||||| || | |||||||||||||||||||||||||||||||    
T  5801114 tccaaacaaactaaattatttgtttaaaaaaagtgatttttattacggtaaacaaacacaaaatagattctaatttttca 5801193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 44434752 - 44434831
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||| ||||||||||| ||||| | ||  ||||| || | |||||||||||||||||||||||||||||||    
T  44434752 tccaaacaaactaaattatttgttttaaaaaagtgatttttattacggtaaacaaacacaaaatagattctaatttttca 44434831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 24688861 - 24688934
Alignment:
Q  40 aacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaattttt 113  Q
    ||||||||| ||||||||||||||||| | ||  |||||||| | |||||||| ||||||||||||||||||||    
T  24688861 aacaaactaaattatttgtttaaaaaaagtgatttttatcacggtaaacaaacgcaaaatagattctaattttt 24688934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 24162244 - 24162323
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||||||||||||||||||||| |  |  ||||| || | |||||||  ||||||||||||| ||||||||    
T  24162244 tccaaacaaactagattatttgtttaaaaaaagttatttttattacggtaaacaaatgcaaaatagattctgatttttca 24162323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 35752068 - 35752033
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacct 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  35752068 cccatcattctttcatgggtagcctagttgtcacct 35752033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 37128076 - 37128111
Alignment:
Q  2 ccatcattctttcatgggtagcctagttgtcacctc 37  Q
    ||||||||||||||||||||||||||||||||||||    
T  37128076 ccatcattctttcatgggtagcctagttgtcacctc 37128111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 11485979 - 11485899
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatag-attctaatttttca 115  Q
    ||||||||||||| ||||||||||||||||| |  |  |||||||| | |||||||| |||||||| |||| |||||||||    
T  11485979 tccaaacaaactaaattatttgtttaaaaaaagtaatttttatcacggtaaacaaacgcaaaatagaattcaaatttttca 11485899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 39453516 - 39453484
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtca 33  Q
    |||||||||||||||||||||||||||||||||    
T  39453516 cccatcattctttcatgggtagcctagttgtca 39453484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 7876362 - 7876327
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacct 36  Q
    |||||||||||||||| |||||||||||||||||||    
T  7876362 cccatcattctttcattggtagcctagttgtcacct 7876327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 10282550 - 10282629
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||||||||||||||||||||  | ||  ||||| ||   ||||||||  |||||||||||| ||||||||    
T  10282550 tccaaacaaactagattatttgtttaaaaatagtgatttttattacgataaacaaacgaaaaatagattctgatttttca 10282629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 24228680 - 24228715
Alignment:
Q  2 ccatcattctttcatgggtagcctagttgtcacctc 37  Q
    ||||||||||||||||||||||||| ||||||||||    
T  24228680 ccatcattctttcatgggtagcctaattgtcacctc 24228715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 24923058 - 24923023
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacct 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  24923058 cccatccttctttcatgggtagcctagttgtcacct 24923023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 39323745 - 39323780
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacct 36  Q
    ||||||||||||||||| ||||||||||||||||||    
T  39323745 cccatcattctttcatgagtagcctagttgtcacct 39323780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 46817455 - 46817420
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacct 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  46817455 cccatcattctttcatgggtagcctagttgccacct 46817420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 24689362 - 24689332
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaa 66  Q
    |||||||||||||||||||||||||||||||    
T  24689362 tccaaacaaactagattatttgtttaaaaaa 24689332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 33455226 - 33455260
Alignment:
Q  2 ccatcattctttcatgggtagcctagttgtcacct 36  Q
    ||||||||||||||| |||||||||||||||||||    
T  33455226 ccatcattctttcataggtagcctagttgtcacct 33455260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 35525928 - 35525898
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaa 66  Q
    |||||||||||||||||||||||||||||||    
T  35525928 tccaaacaaactagattatttgtttaaaaaa 35525898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 43489356 - 43489390
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||| ||||||||||||    
T  43489356 cccatcattctttcatgggtagtctagttgtcacc 43489390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 36816878 - 36816845
Alignment:
Q  2 ccatcattctttcatgggtagcctagttgtcacc 35  Q
    ||||||||||||||||||||||||||||| ||||    
T  36816878 ccatcattctttcatgggtagcctagttgccacc 36816845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 1644553 - 1644478
Alignment:
Q  39 aaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    |||||||||||||||||||||||||||  | ||  ||| |||| | |||||||| ||||||||||| | ||||||||    
T  1644553 aaacaaactagattatttgtttaaaaag-gtgatttttttcacgggaaacaaacgcaaaatagattatgatttttca 1644478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 26371189 - 26371221
Alignment:
Q  3 catcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||| ||||    
T  26371189 catcattctttcatgggtagcctagttgccacc 26371221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 28974918 - 28974886
Alignment:
Q  83 gaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||||||||||||||| |||||||    
T  28974918 gaaaacaaacacaaaatagattctagtttttca 28974886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 31429507 - 31429475
Alignment:
Q  3 catcattctttcatgggtagcctagttgtcacc 35  Q
    ||||||||||||||||||| |||||||||||||    
T  31429507 catcattctttcatgggtaccctagttgtcacc 31429475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35328103 - 35328067
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacctc 37  Q
    |||| |||||||||||||||| |||||||||||||||    
T  35328103 cccaccattctttcatgggtaccctagttgtcacctc 35328067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 35526500 - 35526468
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatg 68  Q
    ||||||||||||| |||||||||||||||||||    
T  35526500 tccaaacaaactaaattatttgtttaaaaaatg 35526468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 5765443 - 5765519
Alignment:
Q  39 aaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    |||||||||||||||||||||||||||||| ||  ||||| |||| |||||||||||||||||||| | ||||||||    
T  5765443 aaacaaactagattatttgtttaaaaaatgtgatttttattacagtaaacaaacacaaaatagattttgatttttca 5765519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 35308207 - 35308286
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||| ||||||||||||||||| | ||  |||||||| | |||||||| ||||||||||| | ||||||||    
T  35308207 tccaaacaaactaaattatttgtttaaaaaaagtgatttttatcacggtaaacaaacgcaaaatagattatgatttttca 35308286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 6007693 - 6007616
Alignment:
Q  38 caaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||||||||||||||||||| | ||  ||||| || | |||||||| ||||||| ||||| ||||||||    
T  6007693 caaacaaactagattatttgtttaaaaaaagtgatttttattacggtaaacaaacgcaaaatacattctgatttttca 6007616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 15199751 - 15199674
Alignment:
Q  38 caaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||| ||||||||||||||||| | ||  ||||| |||| ||||||||| ||||||| |||| ||||||||    
T  15199751 caaacaaactaaattatttgtttaaaaaaagtgatttttattacagtaaacaaacataaaatagtttctgatttttca 15199674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 27917559 - 27917495
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaata 100  Q
    ||||||||||||||||||||||||||||||| | ||  ||||| |||| ||||||| ||||||||    
T  27917559 tccaaacaaactagattatttgtttaaaaaaagtgatttttattacagtaaacaaatacaaaata 27917495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 27963978 - 27963914
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaata 100  Q
    ||||||||||||||||||||||||||||||| | ||  ||||| |||| ||||||| ||||||||    
T  27963978 tccaaacaaactagattatttgtttaaaaaaagtgatttttattacagtaaacaaatacaaaata 27963914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 5764904 - 5764825
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||  ||||||||||||||||||| | ||  ||||| || | |||||||| ||||||||||||| ||||||||    
T  5764904 tccaaacaaatcagattatttgtttaaaaaaagtgatttttattacggtaaacaaacgcaaaatagattctgatttttca 5764825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 40796250 - 40796329
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||||||||||||||| |||||   ||  ||||||| || |||||||| | ||||||||||| ||||||||    
T  40796250 tccaaacaaactagattatttgttttaaaaaaatgatttttatcatagtaaacaaacgctaaatagattctgatttttca 40796329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 6008050 - 6007973
Alignment:
Q  38 caaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    |||||||||||||| |||||||||||||||| ||  ||||| ||   || ||||| ||||||||||||| ||||||||    
T  6008050 caaacaaactagataatttgtttaaaaaatgtgatttttattacgataagcaaacgcaaaatagattctgatttttca 6007973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 28828101 - 28828178
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaattttt 113  Q
    |||||||||| || ||||||||||||||||| | ||  ||||| || | |||||||| ||||||||||||| ||||||    
T  28828101 tccaaacaaattaaattatttgtttaaaaaaagtgatttttattacggtaaacaaacgcaaaatagattctgattttt 28828178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 117361 - 117329
Alignment:
Q  3 catcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||||||    
T  117361 catcattctttcatgggtagcctagttgtcacc 117329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 9509434 - 9509398
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacctc 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  9509434 cccatcattctttcatgggtagcctagttttcacctc 9509398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 27881336 - 27881272
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaata 100  Q
    ||||||||||||||||||||||||||||||| | ||  |||||  ||| |||||||| |||||||    
T  27881336 tccaaacaaactagattatttgtttaaaaaaagtgatttttattgcagtaaacaaacgcaaaata 27881272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 28021517 - 28021453
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaata 100  Q
    ||||||||||||||||||||||||||||||| | ||  |||||  ||| |||||||| |||||||    
T  28021517 tccaaacaaactagattatttgtttaaaaaaagtgatttttattgcagtaaacaaacgcaaaata 28021453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 5424794 - 5424715
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||| ||||||||||||||||| |  |  ||||| |||  |||||||  ||||||||||||| ||||||||    
T  5424794 tccaaacaaactaaattatttgtttaaaaaaagttatttttattacactaaacaaaggcaaaatagattctgatttttca 5424715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2379277 - 2379311
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||| ||||||||||||||||    
T  2379277 cccatcattctttcatggatagcctagttgtcacc 2379311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 9713823 - 9713857
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  9713823 cccatcattctttcatgggtagcctagttgccacc 9713857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 31940451 - 31940485
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  31940451 cccatcattctttcatgggtagcctagttgccacc 31940485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 40458806 - 40458772
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  40458806 cccatcattctttcatgggtagcctagttgccacc 40458772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 17073310 - 17073233
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaattttt 113  Q
    ||||||||||||||||| ||||||||||||| |  |  ||||| || | ||| |||| ||||||||||||| ||||||    
T  17073310 tccaaacaaactagattgtttgtttaaaaaaagtaaattttataacggtaaaaaaacgcaaaatagattctgattttt 17073233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 17574960 - 17575037
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaattttt 113  Q
    ||||||||||||||||| ||||||||||||| |  |  ||||| || | ||| |||| ||||||||||||| ||||||    
T  17574960 tccaaacaaactagattgtttgtttaaaaaaagtaaattttataacggtaaaaaaacgcaaaatagattctgattttt 17575037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 113
Target Start/End: Complemental strand, 1580246 - 1580218
Alignment:
Q  85 aaacaaacacaaaatagattctaattttt 113  Q
    |||||||||||||||||||||||||||||    
T  1580246 aaacaaacacaaaatagattctaattttt 1580218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 4975440 - 4975412
Alignment:
Q  2 ccatcattctttcatgggtagcctagttg 30  Q
    |||||||||||||||||||||||||||||    
T  4975440 ccatcattctttcatgggtagcctagttg 4975412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 13916556 - 13916488
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagatt 104  Q
    ||||||||||||| ||||||||||||||||| | ||  ||||| |  | |||||||| |||||||||||    
T  13916556 tccaaacaaactaaattatttgtttaaaaaacgtgatttttattatggtaaacaaacgcaaaatagatt 13916488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 40649865 - 40649837
Alignment:
Q  1 cccatcattctttcatgggtagcctagtt 29  Q
    |||||||||||||||||||||||||||||    
T  40649865 cccatcattctttcatgggtagcctagtt 40649837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 4727928 - 4728005
Alignment:
Q  38 caaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||||||||||||||||||| | ||  ||||| |||| |||||||| ||||||||||||| ||||||||    
T  4727928 caaacaaactagattatttgtttaaaaaaggtgatttttattacagtaaacaaacgcaaaatagattctgatttttca 4728005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 35040476 - 35040553
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaattttt 113  Q
    ||||||||||||| ||||||||||||||||| | ||  ||||| || | |||||||| ||||||||||||| ||||||    
T  35040476 tccaaacaaactaaattatttgtttaaaaaacgtgatttttattacggtaaacaaacgcaaaatagattctgattttt 35040553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 5497410 - 5497445
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacct 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  5497410 cccatcattctttcatgggtagcctagttgtcacct 5497445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 12545957 - 12546036
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||| ||||||| |||||||||   ||  ||||| || | |||||||||||||||||||||| ||||||||    
T  12545957 tccaaacaaactaaattatttatttaaaaaaaatgatttttattacggtaaacaaacacaaaatagattctgatttttca 12546036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 13957807 - 13957842
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacct 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  13957807 cccatcattctttcatgggtagcctagttgtcacct 13957842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 35040178 - 35040099
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||| ||||||||||| |||||   ||  ||||| || | |||||||||||||||||||||| ||||||||    
T  35040178 tccaaacaaactaaattatttgttttaaaaaaatgatttttattacggtaaacaaacacaaaatagattctgatttttca 35040099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 35041004 - 35040929
Alignment:
Q  40 aacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||||||||||| ||||| | ||  ||||| || | |||||||| ||||||||||||| ||||||||    
T  35041004 aacaaactagattatttgttttaaaaaagtgatttttattacggtaaacaaacgcaaaatagattctgatttttca 35040929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14972115 - 14972149
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  14972115 cccatcattctttcatgggtagcctagttgtcacc 14972149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 19295867 - 19295901
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  19295867 cccatcattctttcatgggtagcctagttgtcacc 19295901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 9424626 - 9424593
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcac 34  Q
    ||||||||||||||||||||||||||||||||||    
T  9424626 cccatcattctttcatgggtagcctagttgtcac 9424593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 27503518 - 27503550
Alignment:
Q  3 catcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||||||    
T  27503518 catcattctttcatgggtagcctagttgtcacc 27503550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 6973200 - 6973235
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacct 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  6973200 cccatcattctttcatgggtagcctagttgacacct 6973235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 23195278 - 23195247
Alignment:
Q  5 tcattctttcatgggtagcctagttgtcacct 36  Q
    ||||||||||||||||||||||||||||||||    
T  23195278 tcattctttcatgggtagcctagttgtcacct 23195247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 28794025 - 28793947
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||| ||||||||||||||||| | ||  |||||| | | |||| ||||||||||||||| | ||||||||    
T  28794025 tccaaacaaactaaattatttgtttaaaaaaagtgatttttatcgcggtaaac-aacacaaaatagattttgatttttca 28793947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 35781392 - 35781313
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||| ||||||||| ||||||||||||| | ||  ||||| || | |||||||| ||||||||||| | ||||||||    
T  35781392 tccaaacgaactagattttttgtttaaaaaaagtgatttttattacggtaaacaaacgcaaaatagattttgatttttca 35781313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 38015548 - 38015513
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacct 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  38015548 cccatcattctttcatgggtagcctagttgccacct 38015513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 9374536 - 9374502
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  9374536 cccatcattctttcatgggtagcctagttgccacc 9374502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 3656600 - 3656568
Alignment:
Q  3 catcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||| ||||    
T  3656600 catcattctttcatgggtagcctagttgccacc 3656568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 6538139 - 6538179
Alignment:
Q  74 tttatcacagaaaacaaacacaaaatagattctaatttttc 114  Q
    |||||||| | |||||||||||||||||||||| |||||||    
T  6538139 tttatcacggtaaacaaacacaaaatagattctgatttttc 6538179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 26863090 - 26863166
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttt 112  Q
    ||||||||||||||||||||||||||||||| | ||  ||||| |||| |||||||| |||| ||||||||||||||    
T  26863090 tccaaacaaactagattatttgtttaaaaaaagtgatttttattacagtaaacaaacgcaaagtagattctaatttt 26863166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 41830065 - 41830001
Alignment:
Q  231 gtttgaaggccttcaagttatcactaactcttgcatcatctccaatgcatctcttacctttgcat 295  Q
    ||||||||| |||| |||| ||||||||||||||||||||||||||||||| || ||||||||||    
T  41830065 gtttgaaggtcttccagttgtcactaactcttgcatcatctccaatgcatcactgacctttgcat 41830001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 3942643 - 3942718
Alignment:
Q  38 caaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||||||||||||||||||| | ||  |||||  | | |||||||||||||||||||||| ||||||||    
T  3942643 caaacaaactagattatttgtttaaaaaaagtgatttttat--cggtaaacaaacacaaaatagattctgatttttca 3942718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 8708039 - 8707963
Alignment:
Q  39 aaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    |||||||| ||||||||||||||||||| | ||  ||||| || | |||||||| ||||||||||||| ||||||||    
T  8708039 aaacaaacaagattatttgtttaaaaaaggtgatttttattacggtaaacaaacgcaaaatagattctgatttttca 8707963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 9059926 - 9059850
Alignment:
Q  39 aaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    |||||||| ||||||||||||||||||| | ||  ||||| || | |||||||| ||||||||||||| ||||||||    
T  9059926 aaacaaacaagattatttgtttaaaaaaggtgatttttattacggtaaacaaacgcaaaatagattctgatttttca 9059850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 54981672 - 54981748
Alignment:
Q  39 aaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    |||||||||| ||||||||||||||||| | ||  ||||| || | |||||||| ||||||||||||| ||||||||    
T  54981672 aaacaaactaaattatttgtttaaaaaaagtgatttttattacggtaaacaaacgcaaaatagattctgatttttca 54981748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 54981908 - 54981833
Alignment:
Q  39 aaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    |||||||||||||||||||||||||||| | ||  ||||| || | |||||||| ||||||||||||| ||||||||    
T  54981908 aaacaaactagattatttgtttaaaaaaggtga-ttttattactgtaaacaaacgcaaaatagattctgatttttca 54981833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 51416108 - 51416151
Alignment:
Q  3 catcattctttcatgggtagcctagttgtcacctccaaacaaac 46  Q
    ||||||||||||||||||||||||||||||||||  ||||||||    
T  51416108 catcattctttcatgggtagcctagttgtcaccttaaaacaaac 51416151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 55000212 - 55000177
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacct 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  55000212 cccatcattctttcatgggtagcctagttgtcacct 55000177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 38156666 - 38156632
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  38156666 cccatcattctttcatgggtagcctagttgtcacc 38156632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 52756101 - 52756067
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  52756101 cccatcattctttcatgggtagcctagttgtcacc 52756067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 24485657 - 24485734
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaattttt 113  Q
    ||||||||||||| ||||||||||| ||||| |  |  ||||| || | |||||||||||||||||||||| ||||||    
T  24485657 tccaaacaaactaaattatttgttttaaaaaagtaatttttattacggtaaacaaacacaaaatagattctgattttt 24485734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 23027849 - 23027929
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaa-atgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||||||||||| |||||||| | ||||  ||||| || | ||||||||| |||||||||| | ||||||||    
T  23027849 tccaaacaaactagattatttctttaaaaataagcgatttttattacggtaaacaaacataaaatagattttgatttttca 23027929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 47510972 - 47510940
Alignment:
Q  3 catcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||||||    
T  47510972 catcattctttcatgggtagcctagttgtcacc 47510940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 54356293 - 54356213
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaat-gcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||| |||||||||||||||||  | ||  ||||| |  | |||||||||||||||||||||| ||||||||    
T  54356293 tccaaacaaactaaattatttgtttaaaaaaaagtgatttttattatggtaaacaaacacaaaatagattctgatttttca 54356213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 7433663 - 7433742
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||| ||||||||||||||| |||||   ||  ||||| |||| ||||||||  |||||||||||| ||||||||    
T  7433663 tccaaacaagctagattatttgttttaaaaaattgatttttattacagtaaacaaacgtaaaatagattctgatttttca 7433742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 25641783 - 25641818
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacct 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  25641783 cccatcattctttcatgggtagcctagttgccacct 25641818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 42589967 - 42590002
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacct 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  42589967 cccatcattctttcatgggtagcctagttgccacct 42590002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 48534041 - 48534006
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacct 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  48534041 cccatcattctttcatgggtagcctagttgccacct 48534006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 54707254 - 54707219
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacct 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  54707254 cccatcattctttcatgggtagcctagttgccacct 54707219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 10333122 - 10333048
Alignment:
Q  39 aaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaattttt 113  Q
    ||||||||||||||| |||||||||||| | ||  ||||| ||   |||||||| ||||||||||||| ||||||    
T  10333122 aaacaaactagattacttgtttaaaaaaagtgatttttattacgctaaacaaacgcaaaatagattctgattttt 10333048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Original strand, 21388483 - 21388513
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaa 66  Q
    |||||||||||||||||||||||||||||||    
T  21388483 tccaaacaaactagattatttgtttaaaaaa 21388513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 37028860 - 37028894
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  37028860 cccatcattctttcatgggtagcctagttgccacc 37028894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 40688450 - 40688484
Alignment:
Q  2 ccatcattctttcatgggtagcctagttgtcacct 36  Q
    ||||||||||||||||||||||||| |||||||||    
T  40688450 ccatcattctttcatgggtagcctaattgtcacct 40688484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 24688252 - 24688285
Alignment:
Q  2 ccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||| |||||||||||||    
T  24688252 ccatcattctttcatgggtaacctagttgtcacc 24688285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 31286825 - 31286792
Alignment:
Q  3 catcattctttcatgggtagcctagttgtcacct 36  Q
    ||||||||||||||| ||||||||||||||||||    
T  31286825 catcattctttcatgagtagcctagttgtcacct 31286792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 44945967 - 44945934
Alignment:
Q  3 catcattctttcatgggtagcctagttgtcacct 36  Q
    ||||||||||||||| ||||||||||||||||||    
T  44945967 catcattctttcatgcgtagcctagttgtcacct 44945934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 45059020 - 45059052
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtca 33  Q
    ||||||||||||||||||| |||||||||||||    
T  45059020 cccatcattctttcatgggcagcctagttgtca 45059052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 47794663 - 47794742
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||| |||||||||| |||||| | ||| |||||||||  |||||||||||||||| ||||| ||||||||    
T  47794663 tccaaacaaactaaattatttgttaaaaaaaagtgacttttatcacaacaaacaaacacaaaataaattctgatttttca 47794742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 49243801 - 49243722
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||||||||||||||||||||| |  |  |||||||| | ||||||| |||||||||||||| ||||||||    
T  49243801 tccaaacaaactagattatttgtttaaaaaaagtaatttttatcacggtaaacaaatacaaaatagattctgatttttca 49243722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 6941375 - 6941297
Alignment:
Q  38 caaacaaactagattatttgtttaaaaaat-gcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    |||||||||||||||||||||||||||||  | ||  |||||||| | |||||||||||||||||||||| ||||||||    
T  6941375 caaacaaactagattatttgtttaaaaaaaagtgatttttatcacggtaaacaaacacaaaatagattctgatttttca 6941297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 6844485 - 6844408
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaattttt 113  Q
    ||||||||||||||||||||||||||||||| | ||  ||||| || | |||||||| ||||||||||||| ||||||    
T  6844485 tccaaacaaactagattatttgtttaaaaaaagtgatttttattacggtaaacaaacgcaaaatagattctgattttt 6844408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 47795506 - 47795582
Alignment:
Q  39 aaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||||||||||||||||||   ||  ||||| || | |||||||||||||||||||||| ||||||||    
T  47795506 aaacaaactagattatttgtttaaaaaaaatgatttttattacggtaaacaaacacaaaatagattctgatttttca 47795582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 47795955 - 47795879
Alignment:
Q  39 aaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||||||||||| ||||||   ||  ||||| |||| |||||||||||||||||||||| ||||||||    
T  47795955 aaacaaactagattatttgttaaaaaaaaaagatttttattacagtaaacaaacacaaaatagattctgatttttca 47795879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 24705300 - 24705379
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    |||||| |||||| ||||||| | ||||||| | ||  |||||||||| |||||||||||||||||||||| ||||||||    
T  24705300 tccaaagaaactaaattatttttctaaaaaaagtgatttttatcacagtaaacaaacacaaaatagattctgatttttca 24705379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 17054246 - 17054170
Alignment:
Q  39 aaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    |||||||||||||||||||||||||||  | ||  ||||| || | |||||||| ||||||||||||| ||||||||    
T  17054246 aaacaaactagattatttgtttaaaaatagtgatttttattacggtaaacaaacgcaaaatagattctgatttttca 17054170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 24686215 - 24686136
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||||||||||||||||||||| |  |  ||||| || | ||||||||  |||||||||||| ||||||||    
T  24686215 tccaaacaaactagattatttgtttaaaaaaagttatttttattacggtaaacaaacgtaaaatagattctgatttttca 24686136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2657440 - 2657474
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  2657440 cccatcattctttcatgggtagcctagttgtcacc 2657474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 41467666 - 41467632
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  41467666 cccatcattctttcatgggtagcctagttgtcacc 41467632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 41895198 - 41895164
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  41895198 cccatcattctttcatgggtagcctagttgtcacc 41895164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 42234977 - 42235011
Alignment:
Q  2 ccatcattctttcatgggtagcctagttgtcacct 36  Q
    |||||||||||||||||||||||||||||||||||    
T  42234977 ccatcattctttcatgggtagcctagttgtcacct 42235011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 6626057 - 6626025
Alignment:
Q  2 ccatcattctttcatgggtagcctagttgtcac 34  Q
    |||||||||||||||||||||||||||||||||    
T  6626057 ccatcattctttcatgggtagcctagttgtcac 6626025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 32448776 - 32448807
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtc 32  Q
    ||||||||||||||||||||||||||||||||    
T  32448776 cccatcattctttcatgggtagcctagttgtc 32448807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Original strand, 6941670 - 6941700
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaa 66  Q
    |||||||||||||||||||||||||||||||    
T  6941670 tccaaacaaactagattatttgtttaaaaaa 6941700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 11981735 - 11981705
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaa 66  Q
    |||||||||||||||||||||||||||||||    
T  11981735 tccaaacaaactagattatttgtttaaaaaa 11981705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 45808003 - 45807973
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaa 66  Q
    |||||||||||||||||||||||||||||||    
T  45808003 tccaaacaaactagattatttgtttaaaaaa 45807973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 46967075 - 46967041
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    ||||||||||||||||||||| |||||||||||||    
T  46967075 cccatcattctttcatgggtaccctagttgtcacc 46967041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 21479233 - 21479152
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacattt--atcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    |||||||||||||||||||||||||||||||    | ||||  ||||| | |||||||||||||||||||||||||||||||    
T  21479233 tccaaacaaactagattatttgtttaaaaaaaaaaagatttttatcacggtaaacaaacacaaaatagattctaatttttca 21479152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 31667533 - 31667457
Alignment:
Q  39 aaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    |||||||||| ||||||||||||||||| | ||  |||||||| | |||||||| ||||||||||||| ||||||||    
T  31667533 aaacaaactaaattatttgtttaaaaaaagtgatttttatcacggtaaacaaacgcaaaatagattctgatttttca 31667457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 41347374 - 41347450
Alignment:
Q  39 aaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    |||||||||| ||||| ||||||||||||| ||  |||||||| | |||||||| ||||||||||||| ||||||||    
T  41347374 aaacaaactaaattatatgtttaaaaaatgtgatttttatcacggtaaacaaacgcaaaatagattctgatttttca 41347450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13543658 - 13543614
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacctccaaacaaa 45  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||    
T  13543658 cccatcattctttcatgggtagcctagttgtcaccttcaaccaaa 13543614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 34249401 - 34249436
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacct 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  34249401 cccatcattctttcatgggtagcctagttgtcacct 34249436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 40662819 - 40662897
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||| ||||||| ||||||||| | ||  ||||| || | |||||||||||||||||||||| ||||||||    
T  40662819 tccaaacaaactaaattatttatttaaaaaa-gtgatttttattactgtaaacaaacacaaaatagattctgatttttca 40662897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 21479430 - 21479352
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttc 114  Q
    |||||||||||||||||||||||||| |||| | ||  |||| ||| | |||||||| ||||||||||||  |||||||    
T  21479430 tccaaacaaactagattatttgtttacaaaaagtgatttttaccacggtaaacaaacgcaaaatagattcccatttttc 21479352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 29687177 - 29687211
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  29687177 cccatcattctttcatgggtagcctagttgtcacc 29687211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 35158084 - 35158050
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  35158084 cccatcattctttcatgggtagcctagttgtcacc 35158050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 42676487 - 42676410
Alignment:
Q  38 caaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||||| ||||||||||||| | ||  ||||| ||   |||||||| ||||||||||||| ||||||||    
T  42676487 caaacaaactagattttttgtttaaaaaaagtgatttttattacgataaacaaacgcaaaatagattctgatttttca 42676410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 145418 - 145450
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtca 33  Q
    |||||||||||||||||||||||||||||||||    
T  145418 cccatcattctttcatgggtagcctagttgtca 145450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 3256124 - 3256049
Alignment:
Q  38 caaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaattttt 113  Q
    ||||||||||| ||||||||||||||||| | ||  ||||| || | ||||||||| |||| ||||||| ||||||    
T  3256124 caaacaaactaaattatttgtttaaaaaaagtgatttttattacggtaaacaaacaaaaaagagattctgattttt 3256049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 3711769 - 3711804
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacct 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  3711769 cccatcattctttcatgggtagcctagttgccacct 3711804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4258625 - 4258659
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  4258625 cccatcattcgttcatgggtagcctagttgtcacc 4258659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 7495608 - 7495578
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaa 66  Q
    |||||||||||||||||||||||||||||||    
T  7495608 tccaaacaaactagattatttgtttaaaaaa 7495578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 19428460 - 19428426
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  19428460 cccatcattctttcatgggtagcctagttgccacc 19428426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 27331439 - 27331473
Alignment:
Q  2 ccatcattctttcatgggtagcctagttgtcacct 36  Q
    ||||||||||||||||||||||||| |||||||||    
T  27331439 ccatcattctttcatgggtagcctaattgtcacct 27331473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 28641326 - 28641292
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  28641326 cccattattctttcatgggtagcctagttgtcacc 28641292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 66
Target Start/End: Original strand, 42679488 - 42679518
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaa 66  Q
    |||||||||||||||||||||||||||||||    
T  42679488 tccaaacaaactagattatttgtttaaaaaa 42679518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 43899005 - 43898971
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  43899005 cccatcattctttcatgggtagcctagttgccacc 43898971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 2688761 - 2688728
Alignment:
Q  3 catcattctttcatgggtagcctagttgtcacct 36  Q
    |||||||||||||||| |||||||||||||||||    
T  2688761 catcattctttcatggatagcctagttgtcacct 2688728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 39301230 - 39301197
Alignment:
Q  2 ccatcattctttcatgggtagcctagttgtcacc 35  Q
    ||||||||||||||||| ||||||||||||||||    
T  39301230 ccatcattctttcatggatagcctagttgtcacc 39301197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 43968628 - 43968705
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaattttt 113  Q
    ||||| || ||||||||||||||||||||||   ||  |||||| | | |||||||| ||||||||||||| ||||||    
T  43968628 tccaagcacactagattatttgtttaaaaaaaatgatttttatcgcggtaaacaaacgcaaaatagattctgattttt 43968705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 3266423 - 3266455
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtca 33  Q
    ||||||||||||||||||||| |||||||||||    
T  3266423 cccatcattctttcatgggtaacctagttgtca 3266455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 40544117 - 40544085
Alignment:
Q  3 catcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||| ||||||||||||    
T  40544117 catcattctttcatgggtagtctagttgtcacc 40544085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 205266 - 205190
Alignment:
Q  39 aaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||||||||||||||||||   ||  ||||| || | |||||||| ||||||||||||||||||||||    
T  205266 aaacaaactagattatttgtttaaaaaaaatgatttttattacggtaaacaaacgcaaaatagattctaatttttca 205190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 106141 - 106220
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||| ||||||||||||||||||| | ||  ||||| || | |||||||| ||||||||||||| ||||||||    
T  106141 tccaaacaaacaagattatttgtttaaaaaaagtgatttttattacggtaaacaaacgcaaaatagattctgatttttca 106220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 27839033 - 27839112
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||||||||||||||||||||| | ||  ||||| || | |||||||| ||||||| ||||| ||||||||    
T  27839033 tccaaacaaactagattatttgtttaaaaaaagtgatttttattacggtaaacaaacgcaaaataaattctgatttttca 27839112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 660190 - 660113
Alignment:
Q  38 caaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    |||||||||||||||||||||||||||||   ||  ||||| |  | |||||||| ||||||||||||||||||||||    
T  660190 caaacaaactagattatttgtttaaaaaaaatgatttttattaacgtaaacaaacgcaaaatagattctaatttttca 660113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 15060323 - 15060289
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  15060323 cccatcattctttcatgggtagcctagttgtcacc 15060289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 34552456 - 34552490
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  34552456 cccatcattctttcatgggtagcctagttgtcacc 34552490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 45633813 - 45633779
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  45633813 cccatcattctttcatgggtagcctagttgtcacc 45633779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 19298589 - 19298666
Alignment:
Q  38 caaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||| ||||||||||||||||| | ||  ||||||   | |||||||| ||||||||||||| ||||||||    
T  19298589 caaacaaactaaattatttgtttaaaaaaagtgatttttatcgtggtaaacaaacgcaaaatagattctgatttttca 19298666  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 42816047 - 42816124
Alignment:
Q  39 aaacaaactagattatttgtttaaaaaatgcg-acatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||||||||||||||||||     |  |||||||| | |||||||||||||||||||||| ||||||||    
T  42816047 aaacaaactagattatttgtttaaaaaaaaattatttttatcacggtaaacaaacacaaaatagattctgatttttca 42816124  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 49014237 - 49014269
Alignment:
Q  3 catcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||||||    
T  49014237 catcattctttcatgggtagcctagttgtcacc 49014269  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 7238960 - 7239039
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    |||||||||||||||||||||||||||||||   ||  ||||| || | |||||||  ||||||||||| | ||||||||    
T  7238960 tccaaacaaactagattatttgtttaaaaaaaatgatttttattacggtaaacaaatgcaaaatagattatgatttttca 7239039  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 20351876 - 20351841
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacct 36  Q
    |||||||||||||||||||||| |||||||||||||    
T  20351876 cccatcattctttcatgggtagtctagttgtcacct 20351841  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 29100846 - 29100767
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||||| ||||||||||| ||||| | ||  ||||| |||| |||||||| |||||  |||||| ||||||||    
T  29100846 tccaaacaaactaaattatttgttttaaaaaagtgagttttattacagtaaacaaacgcaaaaatgattctgatttttca 29100767  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 37239123 - 37239089
Alignment:
Q  2 ccatcattctttcatgggtagcctagttgtcacct 36  Q
    ||||||||||||||||||||||||||||| |||||    
T  37239123 ccatcattctttcatgggtagcctagttgccacct 37239089  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 41632041 - 41632007
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    ||||||||||||||||||||| |||||||||||||    
T  41632041 cccatcattctttcatgggtatcctagttgtcacc 41632007  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 52688486 - 52688520
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  52688486 cccatcattctttcatgggtagcctagttgccacc 52688520  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 31881346 - 31881313
Alignment:
Q  3 catcattctttcatgggtagcctagttgtcacct 36  Q
    |||||||||||||||||||||||||||| |||||    
T  31881346 catcattctttcatgggtagcctagttgccacct 31881313  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 41104016 - 41103944
Alignment:
Q  43 aaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||| |||||||||||||||||| | ||  ||| | || | |||||||||||||||||||| | ||||||||    
T  41104016 aaactggattatttgtttaaaaaaagtgatttttgttaccgtaaacaaacacaaaatagattttgatttttca 41103944  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 42314492 - 42314560
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagatt 104  Q
    ||||||||||||| ||||||| ||||||| | | ||  |||||||  | ||||||||||||||||||||    
T  42314492 tccaaacaaactaaattatttttttaaaataagtgatttttatcaaggtaaacaaacacaaaatagatt 42314560  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 46708775 - 46708739
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacctc 37  Q
    |||||||||||||||| | ||||||||||||||||||    
T  46708775 cccatcattctttcattgatagcctagttgtcacctc 46708739  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 52461500 - 52461536
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacctc 37  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  52461500 cccatcattctttcatggatagcctagttgccacctc 52461536  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 15965570 - 15965605
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacct 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  15965570 cccatcattctttcatgggtagcctagttgtcacct 15965605  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 21980931 - 21980864
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagat 103  Q
    ||||||||||||| ||||||||||||||||| | ||  ||||| || | |||||||||||||||||||    
T  21980931 tccaaacaaactacattatttgtttaaaaaaagtgatttttattacggtaaacaaacacaaaatagat 21980864  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 20469392 - 20469458
Alignment:
Q  36 tccaaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaataga 102  Q
    ||||||||||||| ||||||||||||||||| | ||  |||||||| | |||||||| |||||||||    
T  20469392 tccaaacaaactaaattatttgtttaaaaaaagtgatttttatcacggtaaacaaacgcaaaataga 20469458  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 28948879 - 28948845
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  28948879 cccatcattctttcatgggtagcctagttgtcacc 28948845  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 18661872 - 18661905
Alignment:
Q  2 ccatcattctttcatgggtagcctagttgtcacc 35  Q
    ||||||||||||||||||||||||||||||||||    
T  18661872 ccatcattctttcatgggtagcctagttgtcacc 18661905  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 33438686 - 33438609
Alignment:
Q  38 caaacaaactagattatttgtttaaaaaatgcgacatttatcacagaaaacaaacacaaaatagattctaatttttca 115  Q
    ||||||||||| ||||||||||||||||| | ||  ||||| |  | |||||||| ||||||| ||||||||||||||    
T  33438686 caaacaaactaaattatttgtttaaaaaaagtgatttttattatggtaaacaaacgcaaaataaattctaatttttca 33438609  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4487664 - 4487698
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  4487664 cccatcattctttcatgggtagcctagttgccacc 4487698  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 3786887 - 3786920
Alignment:
Q  2 ccatcattctttcatgggtagcctagttgtcacc 35  Q
    ||||||||||||||||||||||||||||| ||||    
T  3786887 ccatcattctttcatgggtagcctagttgccacc 3786920  T

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Target: scaffold0721 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0721
Description:

Target: scaffold0721; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 7228 - 7262
Alignment:
Q  1 cccatcattctttcatgggtagcctagttgtcacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  7228 cccatcattctttcatgggtagcctagttgtcacc 7262  T

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