View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18077_low_40 (Length: 304)

Name: NF18077_low_40
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18077_low_40
NF18077_low_40
[»] chr7 (13 HSPs)
chr7 (1-286)||(4784307-4784592)
chr7 (1-286)||(4816736-4817021)
chr7 (5-255)||(4697693-4697943)
chr7 (5-245)||(4846534-4846774)
chr7 (2-199)||(4863249-4863446)
chr7 (5-212)||(4712612-4712819)
chr7 (5-191)||(4643067-4643253)
chr7 (2-238)||(4636217-4636453)
chr7 (8-191)||(4661170-4661353)
chr7 (8-189)||(4630275-4630456)
chr7 (2-225)||(4652880-4653103)
chr7 (8-191)||(4666301-4666484)
chr7 (8-191)||(4672006-4672189)
[»] chr4 (1 HSPs)
chr4 (2-191)||(18926306-18926495)
[»] chr6 (1 HSPs)
chr6 (13-119)||(5479246-5479355)


Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 4784592 - 4784307
Alignment:
Q  1 aatctcattcaagaactcgtttacaccttgttgagaacccggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattg 100  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4784592 aatctcattcaagaactcgttcacaccttgttgagaacctggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattg 4784493  T
Q  101 ccgaaccctccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4784492 ccgaaccctccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaac 4784393  T
Q  201 ttgaggaaccttgtttctttgtcttccatgaagtttcttccatttcagtatgagaattaaatattatattccgtctagcaaaaact 286  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4784392 ttgaggaaccttgtttctttgtcttccatgaactttcttccatttcagtatgagaattaaatattatattccgtctagcaaaaact 4784307  T

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Target: chr7; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 4817021 - 4816736
Alignment:
Q  1 aatctcattcaagaactcgtttacaccttgttgagaacccggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattg 100  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4817021 aatctcattcaagaactcgttaacaccttgttgagaaccaggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattg 4816922  T
Q  101 ccgaaccctccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4816921 ccgaaccctccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaac 4816822  T
Q  201 ttgaggaaccttgtttctttgtcttccatgaagtttcttccatttcagtatgagaattaaatattatattccgtctagcaaaaact 286  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4816821 ttgaggaaccttgtttctttgtcttccatgaaatttcttcaatttcagtatgagaattaaatattatattccgtctagcaaaaact 4816736  T

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Target: chr7; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 5 - 255
Target Start/End: Complemental strand, 4697943 - 4697693
Alignment:
Q  5 tcattcaagaactcgtttacaccttgttgagaacccggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattgccga 104  Q
    ||||||| ||||||||||||||||||||||||||||||||| | ||||||||| || || |||||| || |||| || ||||||||| |||| || || |    
T  4697943 tcattcatgaactcgtttacaccttgttgagaacccggtttcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaa 4697844  T
Q  105 accctccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaacttga 204  Q
    |||||||||| || |||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  4697843 accctccaactccaatgataaaaatatcttcgaagttgtttgtagcggctcttatctccgctattgtaaaatagcggcacaaatgggatggtaaagttga 4697744  T
Q  205 ggaaccttgtttctttgtcttccatgaagtttcttccatttcagtatgaga 255  Q
     ||||||| |||  ||||| |||||||| |||||||||||||| |||||||    
T  4697743 cgaaccttcttttcttgtcctccatgaactttcttccatttcaatatgaga 4697693  T

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Target: chr7; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 5 - 245
Target Start/End: Complemental strand, 4846774 - 4846534
Alignment:
Q  5 tcattcaagaactcgtttacaccttgttgagaacccggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattgccga 104  Q
    ||||||| ||| || |||| ||||| | |||||||||||||| |||||||||||||||| ||||| | |||||  || |||||||||||||| |||||||    
T  4846774 tcattcatgaattcatttagaccttatcgagaacccggtttacgacgttttatcgcaacaggtgtgagtccattgatgtaacctttgtacacgttgccga 4846675  T
Q  105 accctccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaacttga 204  Q
    |||||||| | || ||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||| |||||| ||||    
T  4846674 accctccagctccaatgataaaaatatcttcgaagttgtttgtagcttctcttatctccgctattgtaaaatagcggcacaaatgggacggtaaagttga 4846575  T
Q  205 ggaaccttgtttctttgtcttccatgaagtttcttccattt 245  Q
    |||||||| ||| ||||||||||||||| ||||||||||||    
T  4846574 ggaaccttctttgtttgtcttccatgaactttcttccattt 4846534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 199
Target Start/End: Original strand, 4863249 - 4863446
Alignment:
Q  2 atctcattcaagaactcgtttacaccttgttgagaacccggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattgc 101  Q
    |||||||||| |||||| |||| ||||||||||||||| ||||||||||||||||||||||| ||| |  ||||||||||||||||||||||||| ||||    
T  4863249 atctcattcatgaactcatttataccttgttgagaacctggtttaagacgttttatcgcaacaggtatgtctccatcaatataacctttgtacacgttgc 4863348  T
Q  102 cgaaccctccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaa 199  Q
    ||||||||||||| || ||||| |||||||| || |||||||||||||| ||| |||| || | ||||||||||||||||||||||||||||||||||    
T  4863349 cgaaccctccaactccaatgatgaaaatatcgtcaaagttgtttgtagcagctcttatctctgttattgtaaaatagcggcacaaatgggatggtaaa 4863446  T

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Target: chr7; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 212
Target Start/End: Complemental strand, 4712819 - 4712612
Alignment:
Q  5 tcattcaagaactcgtttacaccttgttgagaacccggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattgccga 104  Q
    ||||||| ||| || |||| ||||||| ||||||||  |||| |||||||||||||||| ||| | | ||||||||| |||||||||||||| |||||||    
T  4712819 tcattcatgaattcatttagaccttgtcgagaacccaatttacgacgttttatcgcaacaggtatgagtccatcaatgtaacctttgtacacgttgccga 4712720  T
Q  105 accctccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaacttga 204  Q
    | |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||| | || |||||||||||||||||| ||||    
T  4712719 atcctccaaccccgatgataaaaatatcttcgaagttgtttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaaattga 4712620  T
Q  205 ggaacctt 212  Q
     |||||||    
T  4712619 tgaacctt 4712612  T

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Target: chr7; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 5 - 191
Target Start/End: Original strand, 4643067 - 4643253
Alignment:
Q  5 tcattcaagaactcgtttacaccttgttgagaacccggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattgccga 104  Q
    ||||||| |||||||||  ||||||||||||| |||| ||| || || || | ||||||  ||||   |||||||| | ||||||||||||| ||||| |    
T  4643067 tcattcatgaactcgttggcaccttgttgagagcccgatttgaggcgcttaaccgcaacaagtgtggatccatcaacacaacctttgtacacgttgccaa 4643166  T
Q  105 accctccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatggg 191  Q
    |||||||||| ||||||||||||  ||| ||||||||||||||||||||||| || || || ||||||||  ||||||||| |||||    
T  4643167 accctccaactccgatgataaaagcatcatcgaagttgtttgtagctgctttgatctctgcgattgtaaaggagcggcacagatggg 4643253  T

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Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 238
Target Start/End: Original strand, 4636217 - 4636453
Alignment:
Q  2 atctcattcaagaactcgtttacaccttgttgagaacccggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattgc 101  Q
    ||||| |||| |||||| ||| ||||||||||||| ||||   | || |||||||||||||| |||||   |||||||||  |||||||||||||||| |    
T  4636217 atctcgttcatgaactcatttgcaccttgttgagagcccgacctgaggcgttttatcgcaacgggtgtggatccatcaatgaaacctttgtacacattcc 4636316  T
Q  102 cgaaccctccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaact 201  Q
    | ||||| ||||| ||||| ||      ||| |||||||| ||||| |||||| | || || || |||||||| ||||||||||||| |||||||||| |    
T  4636317 caaaccccccaacaccgataatgttttcatcatcgaagttttttgtggctgctctgatctctgcgattgtaaagtagcggcacaaataggatggtaaagt 4636416  T
Q  202 tgaggaaccttgtttctttgtcttccatgaagtttct 238  Q
    ||| |||||||  |||||||| |||||| || |||||    
T  4636417 tgacgaaccttcattctttgttttccataaactttct 4636453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 191
Target Start/End: Original strand, 4661170 - 4661353
Alignment:
Q  8 ttcaagaactcgtttacaccttgttgagaacccggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattgccgaacc 107  Q
    |||| ||||||||| |||||||||||||| |||| ||| || ||||| ||||||||  ||||   |||||||| | ||||||||||||| ||||| ||||    
T  4661170 ttcatgaactcgttgacaccttgttgagagcccgatttgaggcgtttaatcgcaacaagtgttgatccatcaacacaacctttgtacacgttgccaaacc 4661269  T
Q  108 ctccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatggg 191  Q
    ||||||| || ||||| |||  ||| || ||||| ||||| |||||| | || || || |||||||| ||||||||||||||||    
T  4661270 ctccaactccaatgatgaaatcatcatcaaagttttttgtggctgctctgatctctgcaattgtaaagtagcggcacaaatggg 4661353  T

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Target: chr7; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 189
Target Start/End: Original strand, 4630275 - 4630456
Alignment:
Q  8 ttcaagaactcgtttacaccttgttgagaacccggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattgccgaacc 107  Q
    |||| |||||||||  ||||||||||||| || | ||| || |||||||||||||| |||||   |||||| | | ||||||||||||| || || ||||    
T  4630275 ttcatgaactcgttggcaccttgttgagagcctgatttgaggcgttttatcgcaacaggtgtggatccatcgacacaacctttgtacacgttcccaaacc 4630374  T
Q  108 ctccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatg 189  Q
    ||||||  |||||||| |||  ||  || ||||||||||| |||||||| || ||||| |||||||| ||||| ||||||||    
T  4630375 ctccaaatccgatgatgaaatcattgtcaaagttgtttgtggctgctttgatctccgcgattgtaaagtagcgacacaaatg 4630456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 4652880 - 4653103
Alignment:
Q  2 atctcattcaagaactcgtttacaccttgttgagaacccggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattgc 101  Q
    |||||||||| |||||||||  ||||||||||||| || | ||| || |||||||||||||| ||  |   |||||| ||  ||||||||||||| ||||    
T  4652880 atctcattcatgaactcgttggcaccttgttgagagccagatttgaggcgttttatcgcaacaggcatggatccatcgatgcaacctttgtacacgttgc 4652979  T
Q  102 cgaaccctccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaact 201  Q
    | || |||||||| |||||||| |||| ||| |||||||| ||||| |||||||| || || || ||||| ||  |||| |||||||| | ||| |||      
T  4652980 caaatcctccaacaccgatgatgaaaacatcatcgaagttatttgtggctgctttgatctctgcgattgtgaaggagcgacacaaatgtggtggcaaaga 4653079  T
Q  202 tgaggaaccttgtttctttgtctt 225  Q
    ||| || ||||  |||||||||||    
T  4653080 tgacgaccctttgttctttgtctt 4653103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 191
Target Start/End: Original strand, 4666301 - 4666484
Alignment:
Q  8 ttcaagaactcgtttacaccttgttgagaacccggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattgccgaacc 107  Q
    |||| |||||||||  ||||||||||||| || | ||| || |||||||| |||||  ||||   |||||| | | ||||||||||||| ||||| ||||    
T  4666301 ttcatgaactcgttggcaccttgttgagagcctgatttgaggcgttttatggcaacaagtgtggatccatcgacacaacctttgtacacgttgccaaacc 4666400  T
Q  108 ctccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatggg 191  Q
    ||||||| |||||||| |||  ||| || ||||||||||| |||||| | || || || ||||||||  | |||||||||||||    
T  4666401 ctccaactccgatgatgaaatcatcgtcaaagttgtttgtggctgctctgatctctgcaattgtaaaggaccggcacaaatggg 4666484  T

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Target: chr7; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 191
Target Start/End: Original strand, 4672006 - 4672189
Alignment:
Q  8 ttcaagaactcgtttacaccttgttgagaacccggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattgccgaacc 107  Q
    |||| |||||||||  ||||||| ||||| |||| ||| || |||||||| |||||  ||||   |||||| | | ||||||||||||  || || ||||    
T  4672006 ttcatgaactcgttggcaccttgctgagagcccgatttgagccgttttatggcaacaagtgtggatccatcgacacaacctttgtacaggtttccaaacc 4672105  T
Q  108 ctccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatggg 191  Q
    ||||||| ||||||||| ||  ||| |||||||||||||| |||||||| || || || ||||||||  | |||||||| ||||    
T  4672106 ctccaactccgatgatagaagcatcatcgaagttgtttgtggctgctttgatctctgcgattgtaaaggaacggcacaagtggg 4672189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 2 - 191
Target Start/End: Complemental strand, 18926495 - 18926306
Alignment:
Q  2 atctcattcaagaactcgtttacaccttgttgagaacccggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattgc 101  Q
    |||||||||| |||||||||  | ||||||||||| || ||||| ||||||||||| ||||| |||||   |  ||| ||  ||||||| ||||| ||||    
T  18926495 atctcattcatgaactcgttggccccttgttgagagcctggtttgagacgttttattgcaacgggtgtggatttatcgatgaaacctttatacacgttgc 18926396  T
Q  102 cgaaccctccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatggg 191  Q
    | ||||||||||| |||||||| |||  ||| || ||||| ||||| ||||||||||| || || |||||||| ||||||||||||||||    
T  18926395 caaaccctccaactccgatgattaaatcatcatcaaagttatttgtggctgcttttatctctgcaattgtaaagtagcggcacaaatggg 18926306  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 5479355 - 5479246
Alignment:
Q  13 gaactcgtttacaccttgttgagaacccggtttaagacgttttatcgcaactggtgtaactcca---tcaatataacctttgtacacattgccgaaccct 109  Q
    |||||| ||| |||||||||| |||||||||||||| |||||||| |||||  ||||    |||   ||||| || ||||||||||||| |||||| |||    
T  5479355 gaactcattttcaccttgttgtgaacccggtttaagccgttttattgcaacctgtgttgaaccattgtcaatgtagcctttgtacacatggccgaatcct 5479256  T
Q  110 ccaaccccga 119  Q
    ||||| ||||    
T  5479255 ccaactccga 5479246  T

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