View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18077_low_41 (Length: 300)
Name: NF18077_low_41
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 55 - 284
Target Start/End: Complemental strand, 5682622 - 5682398
Alignment:
| Q |
55 |
gggaatagacatatagtcttgtgttttgaatagcaaaaggagataaaagacactgtggtgtggaatagagggtaggggctcacgagatgttgcaacaaaa |
154 |
Q |
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| T |
5682622 |
gggaatagacata--gtcttgtgttttgaatagcaaaaggagataaaa-acactg--gtgtggaatagagggtaggggctcacgagatgttgcaacaaaa |
5682528 |
T |
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| Q |
155 |
gaagccaaaaaccaatcaagtttaaaggacaatatagctattgaaatcattcaaatttagctttatatatatcttattcagaatataactccacatacta |
254 |
Q |
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| T |
5682527 |
gaagccaaaaaccaatcaagtttaaaggacaatatagctattgaaatcatgcaaatttagctttatatatatcttattcagaatataactccacatacta |
5682428 |
T |
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| Q |
255 |
tgaaagctagttcagaaaatgccttctttg |
284 |
Q |
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| T |
5682427 |
tgaaagctagttcagaaaatgccttctttg |
5682398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 128 - 214
Target Start/End: Complemental strand, 5692740 - 5692656
Alignment:
| Q |
128 |
aggggctcacgagatgttgcaacaaaagaagccaaaaaccaatcaagtttaaaggacaatatagctattgaaatcattcaaatttag |
214 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||| ||||||||| ||||||| ||| ||||| |
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| T |
5692740 |
aggggctcacgagatgaaacaacaaatgaagccaaaaaccaatcaagtctaaaggaca--atagctattaaaatcatacaattttag |
5692656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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