View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18077_low_42 (Length: 292)

Name: NF18077_low_42
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18077_low_42
NF18077_low_42
[»] chr5 (2 HSPs)
chr5 (24-196)||(33541736-33541908)
chr5 (27-186)||(18571198-18571357)
[»] chr6 (12 HSPs)
chr6 (31-179)||(212955-213103)
chr6 (94-186)||(7029976-7030068)
chr6 (94-183)||(7012983-7013072)
chr6 (94-183)||(9170965-9171054)
chr6 (94-183)||(7025919-7026008)
chr6 (98-183)||(7041639-7041724)
chr6 (94-183)||(9159374-9159463)
chr6 (27-68)||(9170904-9170945)
chr6 (27-68)||(7012907-7012948)
chr6 (27-64)||(7025843-7025880)
chr6 (27-64)||(7029900-7029937)
chr6 (27-68)||(9159483-9159524)
[»] chr1 (4 HSPs)
chr1 (101-234)||(8814178-8814311)
chr1 (101-244)||(247022-247168)
chr1 (101-244)||(251206-251355)
chr1 (98-147)||(235374-235423)
[»] chr3 (2 HSPs)
chr3 (98-233)||(9494646-9494784)
chr3 (98-246)||(9344003-9344151)


Alignment Details
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 24 - 196
Target Start/End: Original strand, 33541736 - 33541908
Alignment:
Q  24 ccgtctccttctcattaagcttaaacaaatgaatccttacaggattgtgaccagggaagccgatacgtgtacaatcataaacatccactaacaacaaatc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33541736 ccgtctccttctcattaagcttaaacaaatgaatccttacaggattgtgaccagggaagccgatacgtgtacaatcataaacatccactaacaacaaatc 33541835  T
Q  124 acccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactgaacagtggag 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33541836 acccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactgaacagtggag 33541908  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 186
Target Start/End: Original strand, 18571198 - 18571357
Alignment:
Q  27 tctccttctcattaagcttaaacaaatgaatccttacaggattgtgaccagggaagccgatacgtgtacaatcataaacatccactaacaacaaatcacc 126  Q
    |||||||||||| ||||||||| |||| ||||||||| ||||  ||| ||| ||| |  | ||    ||| |||||||| ||  ||||||||| ||| ||    
T  18571198 tctccttctcatcaagcttaaagaaatcaatccttacgggatcatgatcagagaacctaacacccacacactcataaacgtcagctaacaacagatcgcc 18571297  T
Q  127 cttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactg 186  Q
    || ||||||||| |||||||| | ||  |||||| |||||||||||||| ||| ||||||    
T  18571298 ctcgctctccaccaagaatttcatgttcccaccaacaaccaaagattcatccattaactg 18571357  T

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Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 31 - 179
Target Start/End: Complemental strand, 213103 - 212955
Alignment:
Q  31 cttctcattaagcttaaacaaatgaatccttacaggattgtgaccagggaagccgatacgtgtacaatcataaacatccactaacaacaaatcacccttg 130  Q
    |||||||||||||||||||| |||||||||||||||||  ||| ||||||| ||  ||||| |||| ||||||||||| ||||||||||||||||||| |    
T  213103 cttctcattaagcttaaacacatgaatccttacaggatcatgatcagggaacccagtacgtatacactcataaacatctactaacaacaaatcaccctcg 213004  T
Q  131 ctctccactaagaatttgacgtctccaccaccaaccaaagattcagcca 179  Q
    ||||||||||||||||| | | |||||||| ||||||| | ||||||||    
T  213003 ctctccactaagaatttcatgcctccaccatcaaccaatggttcagcca 212955  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 7029976 - 7030068
Alignment:
Q  94 acaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactg 186  Q
    |||||||||||||||| ||||||||||||| |||| |||||||||||||||||| || | |||||||||||||||||  ||||||||||||||    
T  7029976 acaatcataaacatccgctaacaacaaatccccctcgctctccactaagaatttcacatttccaccaccaaccaaaggctcagccactaactg 7030068  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 7012983 - 7013072
Alignment:
Q  94 acaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaa 183  Q
    |||||||||||||||  |||||||||||||  ||| |||||||||||||||||| | ||| || ||||||||||||| ||||||||||||    
T  7012983 acaatcataaacatctgctaacaacaaatcctcctcgctctccactaagaatttcatgtccccgccaccaaccaaaggttcagccactaa 7013072  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 9170965 - 9171054
Alignment:
Q  94 acaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaa 183  Q
    |||||||||||| ||| ||||||||||||| |||| |||||||||||||||||| | ||  |||||||||||||||| |||||| |||||    
T  9170965 acaatcataaacgtccgctaacaacaaatctccctcgctctccactaagaatttcatgttcccaccaccaaccaaaggttcagcaactaa 9171054  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 7025919 - 7026008
Alignment:
Q  94 acaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaa 183  Q
    ||||| |||||||||| ||||||||||||| |||| |||||||||||||||||| | ||| || || |||| ||||| ||||||||||||    
T  7025919 acaattataaacatccgctaacaacaaatccccctcgctctccactaagaatttcatgtccccgccgccaatcaaaggttcagccactaa 7026008  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 7041639 - 7041724
Alignment:
Q  98 tcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaa 183  Q
    |||||||||||| ||||||||||||| |||||||| ||| ||||||||||   || ||||| ||||||||||| ||||||||||||    
T  7041639 tcataaacatccgctaacaacaaatctcccttgctttccgctaagaatttcttgtttccacgaccaaccaaaggttcagccactaa 7041724  T

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Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 9159463 - 9159374
Alignment:
Q  94 acaatcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaa 183  Q
    |||||||||| | |||  |||||||||||| |||| |||||||||||||||||| | ||  |||||||||||||||| ||||||||||||    
T  9159463 acaatcataagcctccgataacaacaaatctccctcgctctccactaagaattttatgttcccaccaccaaccaaaggttcagccactaa 9159374  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 9170904 - 9170945
Alignment:
Q  27 tctccttctcattaagcttaaacaaatgaatccttacaggat 68  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  9170904 tctccttctcattaagcttaaacaaatcaatccttacaggat 9170945  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 7012907 - 7012948
Alignment:
Q  27 tctccttctcattaagcttaaacaaatgaatccttacaggat 68  Q
    ||||||||||||||||||||||||||| ||| ||||||||||    
T  7012907 tctccttctcattaagcttaaacaaatcaattcttacaggat 7012948  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 7025843 - 7025880
Alignment:
Q  27 tctccttctcattaagcttaaacaaatgaatccttaca 64  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  7025843 tctccttctcattaagcttaaacaaatcaatccttaca 7025880  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 7029900 - 7029937
Alignment:
Q  27 tctccttctcattaagcttaaacaaatgaatccttaca 64  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  7029900 tctccttctcattaagcttaaacaaatcaatccttaca 7029937  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 9159524 - 9159483
Alignment:
Q  27 tctccttctcattaagcttaaacaaatgaatccttacaggat 68  Q
    |||||||||| |||||||||||||||| ||||||||||||||    
T  9159524 tctccttctcgttaagcttaaacaaatcaatccttacaggat 9159483  T

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Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 101 - 234
Target Start/End: Complemental strand, 8814311 - 8814178
Alignment:
Q  101 taaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactgaacagtggagtcgt 200  Q
    ||||||||  |||||||||||||||||||||||||||||| |||||| |  || || ||| ||| ||||||||||||||||||||||||||| ||||| |    
T  8814311 taaacatctgctaacaacaaatcacccttgctctccactaggaatttaatatccccgccagcaagcaaagattcagccactaactgaacagttgagtcat 8814212  T
Q  201 ccggtccaacagcaactgtccgtccagttttgtc 234  Q
    |||||||||||| ||| ||| |||||||||||||    
T  8814211 ccggtccaacagtaacagtctgtccagttttgtc 8814178  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 101 - 244
Target Start/End: Original strand, 247022 - 247168
Alignment:
Q  101 taaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactgaacagtgga---gt 197  Q
    |||||||| | |||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||| |||||| | ||||||||    |    
T  247022 taaacatctattaacaacaaatcacccttgctctccactaagaatttaatatctccaccaccaaccaaagattcagcaactaaccggacagtggaatcat 247121  T
Q  198 cgtccggtccaacagcaactgtccgtccagttttgtcgacagcataa 244  Q
    | ||||||||||   ||||||||| |||||||||||| || ||||||    
T  247122 cctccggtccaaatccaactgtccatccagttttgtctaccgcataa 247168  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 244
Target Start/End: Complemental strand, 251355 - 251206
Alignment:
Q  101 taaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactgaacagtggagtcgt 200  Q
    ||||||||  |||||||||||||||  | ||||||||| |||||||| |  |||||||||||||||||||||| |||||||||||| |||||||| || |    
T  251355 taaacatctgctaacaacaaatcactgtcgctctccaccaagaatttaatatctccaccaccaaccaaagattgagccactaactggacagtggaatcct 251256  T
Q  201 ccggtc------caacagcaactgtccgtccagttttgtcgacagcataa 244  Q
    | ||||      |||||| ||||||||||||||| ||||| || ||||||    
T  251255 caggtccaagttcaacagtaactgtccgtccagtattgtctaccgcataa 251206  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 235374 - 235423
Alignment:
Q  98 tcataaacatccactaacaacaaatcacccttgctctccactaagaattt 147  Q
    |||||||||||  |||||||||||||||| | ||||||||||||||||||    
T  235374 tcataaacatctgctaacaacaaatcaccgtcgctctccactaagaattt 235423  T

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Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 98 - 233
Target Start/End: Complemental strand, 9494784 - 9494646
Alignment:
Q  98 tcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccacca---accaaagattcagccactaactgaacagtgg 194  Q
    ||||||||||| ||||||||||||||||| |  ||||| ||||||||||||| ||| || ||||||   ||||||||||||||||||||||  | ||||     
T  9494784 tcataaacatctactaacaacaaatcaccgtcactctcgactaagaatttgatgtcccccccaccagaaaccaaagattcagccactaactcgaaagtga 9494685  T
Q  195 agtcgtccggtccaacagcaactgtccgtccagttttgt 233  Q
    |||| ||| |||||| || | ||||||||||||||||||    
T  9494684 agtcatccagtccaagagtagctgtccgtccagttttgt 9494646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 246
Target Start/End: Original strand, 9344003 - 9344151
Alignment:
Q  98 tcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactgaacagtggagt 197  Q
    |||||||  ||||||| |||||| || ||||  ||||| |||||||||||   ||| || ||||||||||||| ||||   ||||| || ||| | ||||    
T  9344003 tcataaatgtccactagcaacaactctccctctctctcgactaagaattttttgtccccgccaccaaccaaaggttcaataactaagtggacattcgagt 9344102  T
Q  198 cgtccggtccaacagcaactgtccgtccagttttgtcgacagcataaag 246  Q
     |||||| |||||   ||||||| | ||| ||||||||||| |||||||    
T  9344103 tgtccggcccaaccataactgtctgaccatttttgtcgacaacataaag 9344151  T

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