View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18077_low_46 (Length: 281)
Name: NF18077_low_46
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 38752908 - 38752651
Alignment:
| Q |
1 |
caaataactaattaatagactcattggatcttattatagtttatcctacaaaaactcattgtttgtactgacatggtcatatgcttcttaaagttagtaa |
100 |
Q |
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| T |
38752908 |
caaataactaattaatagactcattggatcttattatagtttatcctacaaaaactcattgtttgtactgacatggtcatatgcttcttaaagttagtaa |
38752809 |
T |
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| Q |
101 |
actatttagatagccaaaagaagagttacttaaatgatatgtcatatatttttgtttcatagagtaaaattataatgtgaaaatgttgggtatgactcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38752808 |
actatttagatagccaaaagaagagttacttaaatgatatgtcatatatttttgtttcatagagtaaaattataatgtgaaaatgttgggtatgactcat |
38752709 |
T |
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| Q |
201 |
agtttaccggtaaatagataagtttattgatcagagataatcttataaattggactgt |
258 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
38752708 |
agtttaccggtaaatagacaagtttattgatcagagataatcttgtaaattggactgt |
38752651 |
T |
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