View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18077_low_48 (Length: 270)
Name: NF18077_low_48
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 4062368 - 4062604
Alignment:
| Q |
17 |
aaatatgattactcatatcatagttttctttctcatatagcctcaaatcaaattaagcttgagttgacaacaatatgcttcaaagggttggtcacatcac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4062368 |
aaatatgattactcatatcatagttttctttctcatatagcctcaaatcaaattaagcttgagttgacaacaatatgcttcaaagggttggtcacatcac |
4062467 |
T |
|
| Q |
117 |
ctccaccagcatgcttgacaaactcagcaggggttagaaaactaccatggcaaacacacaaaattctcacttcctcacctttcccatacttgtaaagaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4062468 |
ctccaccagcatgcttgacaaactcagcaggggtaagaaaactaccatggcaaacacacaaaattctcacttcctcacctttcccatacttgtaaagaaa |
4062567 |
T |
|
| Q |
217 |
accttcaattttcttcccattaggtccctctcctttg |
253 |
Q |
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|||||||| |||||||||||||||||||||||||||| |
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| T |
4062568 |
accttcaactttcttcccattaggtccctctcctttg |
4062604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 210
Target Start/End: Complemental strand, 19917254 - 19917154
Alignment:
| Q |
110 |
acatcacctccaccagcatgcttgacaaactcagcaggggttagaaaactaccatggcaaacacacaaaattctcacttcctcacctttcccatacttgt |
209 |
Q |
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||||| || |||||||||||||| ||||||||||| || | ||||| | |||||||| ||||||| || |||||||| || ||||| ||||| |||| |
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| T |
19917254 |
acatctccaccaccagcatgcttaacaaactcagctggagacagaaagtttccatggcacacacacattatcctcacttcttcccctttgccatatttgt |
19917155 |
T |
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| Q |
210 |
a |
210 |
Q |
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| T |
19917154 |
a |
19917154 |
T |
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