View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18077_low_49 (Length: 261)
Name: NF18077_low_49
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_low_49 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 4784601 - 4784855
Alignment:
| Q |
1 |
ctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatgacttcatgcaacgtggcagtcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4784601 |
ctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatgacttcatgcaacgtggcagtcta |
4784700 |
T |
|
| Q |
101 |
tgtgaatatctttatggatcagataacaaacctcttacttggaagcagaggcttgagattctattaggctccgcgcgggggttgcattatctgcatgcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
4784701 |
tgtgaatatctttatggatcagataacaaacctcttacctggaagcagaggcttgagattctattaggtgccgcgcgggggttgcattatctgcatgcag |
4784800 |
T |
|
| Q |
201 |
gtgcgaagcagaatatcatacaccgtgacgtaaagagtacaaacatattcttgga |
255 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
4784801 |
gtgcgaagcacaatatcatacaccgtgacgtgaagagtacaaacatattgttgga |
4784855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 4817030 - 4817284
Alignment:
| Q |
1 |
ctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatgacttcatgcaacgtggcagtcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4817030 |
ctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatgacttcatgcaacgtggcagtcta |
4817129 |
T |
|
| Q |
101 |
tgtgaatatctttatggatcagataacaaacctcttacttggaagcagaggcttgagattctattaggctccgcgcgggggttgcattatctgcatgcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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|
| T |
4817130 |
tgtgaatatctttatggatcagataacaaacctcttacctggaagcagaggcttgagattctattaggtgccgcgcgggggttgcattatttgcatgcag |
4817229 |
T |
|
| Q |
201 |
gtgcgaagcagaatatcatacaccgtgacgtaaagagtacaaacatattcttgga |
255 |
Q |
| |
|
|||||||||| ||||||||||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
4817230 |
gtgcgaagcacaatatcatacaccgtgatgtgaagagtacaaacatattgttgga |
4817284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 4863239 - 4862985
Alignment:
| Q |
1 |
ctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatgacttcatgcaacgtggcagtcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4863239 |
ctctcagcttcgtcatattcacttggtttctctcattggatattgcaacgaaggtgaggagatgattctcgtttatgacttcatgcaacgtggcactctc |
4863140 |
T |
|
| Q |
101 |
tgtgaatatctttatggatcagataacaaacctcttacttggaagcagaggcttgagattctattaggctccgcgcgggggttgcattatctgcatgcag |
200 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||||||||||| |||| ||||||||||| || || | || ||||||| |||||||| ||||| | |
|
|
| T |
4863139 |
cgtgaatatctttatggttcggataatgaacctcttacttggaagaagagacttgagattctgttgggggcagcaagggggttacattatcttcatgctg |
4863040 |
T |
|
| Q |
201 |
gtgcgaagcagaatatcatacaccgtgacgtaaagagtacaaacatattcttgga |
255 |
Q |
| |
|
||| ||||| |||||||||||||||||||| |||||||| |||||||| ||||| |
|
|
| T |
4863039 |
gtgtaaagcacaatatcatacaccgtgacgtgaagagtaccaacatattgttgga |
4862985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 4846787 - 4847041
Alignment:
| Q |
1 |
ctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatgacttcatgcaacgtggcagtcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||| |||| || |||||||||||| ||||||||||||||||||||||| | ||| |
|
|
| T |
4846787 |
ctctcagcttcgtcatattcacttggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgcaacgtggtactctc |
4846886 |
T |
|
| Q |
101 |
tgtgaatatctttatggatcagataacaaacctcttacttggaagcagaggcttgagattctattaggctccgcgcgggggttgcattatctgcatgcag |
200 |
Q |
| |
|
||||| |||| ||||| || ||||| ||||||||| ||||| || || || |||||||||||||| | || |||||||| ||||||| |||| || |
|
|
| T |
4846887 |
agtgaacatctctatggttcggataatgaacctcttaggtggaatcaaagactcgagattctattaggtgcagcaagggggttgaattatcttcatgaag |
4846986 |
T |
|
| Q |
201 |
gtgcgaagcagaatatcatacaccgtgacgtaaagagtacaaacatattcttgga |
255 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
4846987 |
gtgcgaagcacaatatcatacatcgtgacgttaagagtacaaacatattgttgga |
4847041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 4697956 - 4698204
Alignment:
| Q |
1 |
ctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatgacttcatgcaacgtggcagtcta |
100 |
Q |
| |
|
|||||| |||||||| |||||||||||||| || |||||||||||||| ||||||| |||||||||||||||||| ||||||||| ||||||||| ||| |
|
|
| T |
4697956 |
ctctcaacttcgtcacattcacttggtttctctcattggatattgcaacgaaggtgcagagatgattctcgtttacgacttcatggaacgtggcactctt |
4698055 |
T |
|
| Q |
101 |
tgtgaatatctttatggatcagataacaaacctcttacttggaagcagaggcttgagattctattaggctccgcgcgggggttgcattatctgcatgcag |
200 |
Q |
| |
|
|||||||||| ||||| || |||||| ||||||||||||||||| |||| || ||||||||||| || | || | || | |||||||| ||||||| |
|
|
| T |
4698056 |
cgtgaatatctctatggttcggataacgaacctcttacttggaagaagagactcgagattctattgggggcagcaagaggcctacattatcttcatgcag |
4698155 |
T |
|
| Q |
201 |
gtgcgaagcagaatatcatacaccgtgacgtaaagagtacaaacatatt |
249 |
Q |
| |
|
|||||||||| ||||||||||||||||| || |||||||| |||||||| |
|
|
| T |
4698156 |
gtgcgaagcacaatatcatacaccgtgatgtgaagagtaccaacatatt |
4698204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 4712832 - 4713086
Alignment:
| Q |
1 |
ctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatgacttcatgcaacgtggcagtcta |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || ||||||||||||||||||| || |||||||||||| ||||||||||| ||| ||| ||||| ||| |
|
|
| T |
4712832 |
ctctcagcttcgtcatattcacttagtttccctcattggatattgcaatgaagatgcagagatgattcttgtttatgactttatggaacatggcactctc |
4712931 |
T |
|
| Q |
101 |
tgtgaatatctttatggatcagataacaaacctcttacttggaagcagaggcttgagattctattaggctccgcgcgggggttgcattatctgcatgcag |
200 |
Q |
| |
|
||||| |||| ||||| || |||||| ||||||||| ||||| || || ||| | ||||||||| | | || |||| ||||||||||| |||| || |
|
|
| T |
4712932 |
cgtgaacatctctatggttcggataacgaacctcttaggtggaatcaaagacttaatattctattatgtgcagcaaggggattgcattatcttcatgaag |
4713031 |
T |
|
| Q |
201 |
gtgcgaagcagaatatcatacaccgtgacgtaaagagtacaaacatattcttgga |
255 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
4713032 |
gtgcgaagcataatatcatacaccgtgacgttaagagtacaaatatattgttgga |
4713086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 255
Target Start/End: Complemental strand, 4652866 - 4652616
Alignment:
| Q |
5 |
cagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatgacttcatgcaacgtggcagtctatgtg |
104 |
Q |
| |
|
|||||||| || ||||||||||| || || | |||||||||||||| | ||| |||||| | |||||||| |||||||||| || | ||| |||| |
|
|
| T |
4652866 |
cagcttcgccacattcacttggtatccctcgtgggatattgcaatgatgacacagaaatgattttggtttatgagttcatgcaacacggtactctgtgtg |
4652767 |
T |
|
| Q |
105 |
aatatctttatggatcagataacaaacctcttact-tggaagcagaggcttgagattctattaggctccgcgcgggggttgcattatctgcatgcaggtg |
203 |
Q |
| |
|
| ||||||||||| || ||||| | || ||||| |||||| ||||||||||||||||||| || |||||| | ||| || ||||||| ||||||| | |
|
|
| T |
4652766 |
agtatctttatggttctaataaccagcc-cttaccgtggaagaagaggcttgagattctattgggttccgcgagagggctgaattatcttcatgcagagg |
4652668 |
T |
|
| Q |
204 |
cgaagcagaatatcatacaccgtgacgtaaagagtacaaacatattcttgga |
255 |
Q |
| |
|
||| || || || |||||||||||||| ||||| || |||||||| ||||| |
|
|
| T |
4652667 |
tgaaacacaagataatacaccgtgacgtgaagagcaccaacatattgttgga |
4652616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 4666285 - 4666031
Alignment:
| Q |
1 |
ctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatgacttcatgcaacgtggcagtcta |
100 |
Q |
| |
|
|||||||||||| || ||||||||||| || ||| | |||||||||||||| | |||||||||||| |||||||| |||||||| | || | ||| |
|
|
| T |
4666285 |
ctctcagcttcgccacattcacttggtatcccttgtgggatattgcaatgacgacacagagatgattctggtttatgagttcatgcagcacggtactctt |
4666186 |
T |
|
| Q |
101 |
tgtgaatatctttatggatcagataacaaacctcttacttggaagcagaggcttgagattctattaggctccgcgcgggggttgcattatctgcatgcag |
200 |
Q |
| |
|
|| || ||||||||||| || ||||| | || || | ||||||||||||||||||||||| || || | ||| | ||| || ||||||| ||| | | |
|
|
| T |
4666185 |
tgcgagtatctttatggttctaataaccagcccctatcatggaagcagaggcttgagattcttttgggtgcagcgagagggctgaattatcttcatactg |
4666086 |
T |
|
| Q |
201 |
gtgcgaagcagaatatcatacaccgtgacgtaaagagtacaaacatattcttgga |
255 |
Q |
| |
|
| ||| ||||| || |||||||||||||| ||||| || |||||||| ||||| |
|
|
| T |
4666085 |
aggtgaaacagaagataatacaccgtgacgtgaagagcaccaacatattgttgga |
4666031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 255
Target Start/End: Complemental strand, 4643050 - 4642800
Alignment:
| Q |
5 |
cagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatgacttcatgcaacgtggcagtctatgtg |
104 |
Q |
| |
|
|||||||| || ||||||||||| || || | ||||||||||| || | |||||||||| | |||||||| |||||||| | || | ||| |||| |
|
|
| T |
4643050 |
cagcttcgccacattcacttggtgtccctcgtgggatattgcaacgatgacacagagatgattttggtttatgagttcatgcagcacggtactctttgtg |
4642951 |
T |
|
| Q |
105 |
aatatctttatggatcagataacaaacctcttacttggaagcagaggcttgagattctattaggctccgcgcgggggttgcattatctgcatgcaggtgc |
204 |
Q |
| |
|
| ||||||||||| || ||||| | || || |||||| |||||||||||| ||||||||||| |||| | ||| || ||||||| ||||| | | |
|
|
| T |
4642950 |
agtatctttatggttctaataacgagccactaccttggaggcagaggcttgaaattctattaggtgccgcaagagggctgaattatcttcatgctgaggt |
4642851 |
T |
|
| Q |
205 |
gaagcagaatatcatacaccgtgacgtaaagagtacaaacatattcttgga |
255 |
Q |
| |
|
|||||| || || ||||| |||||||| ||||| || |||||||| ||||| |
|
|
| T |
4642850 |
gaagcacaaaataatacatcgtgacgtgaagagcaccaacatattgttgga |
4642800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 255
Target Start/End: Complemental strand, 4661095 - 4660900
Alignment:
| Q |
60 |
agatgattctcgtttatgacttcatgcaacgtggcagtctatgtgaatatctttatggatcagataacaaacctcttacttggaagcagaggcttgagat |
159 |
Q |
| |
|
|||||||||| |||||||| |||||||| || || | ||| || || |||||||||| || ||||| | || || |||||| ||| ||||||||||| |
|
|
| T |
4661095 |
agatgattctggtttatgaattcatgcagcgcggtactctctgcgagcatctttatggttctaataaccagcccctaccttggaggcaaaggcttgagat |
4660996 |
T |
|
| Q |
160 |
tctattaggctccgcgcgggggttgcattatctgcatgcaggtgcgaagcagaatatcatacaccgtgacgtaaagagtacaaacatattcttgga |
255 |
Q |
| |
|
||||| || || || | |||||||||||||| ||||| | | ||| || || || |||||||| ||||||||||| || |||||||| ||||| |
|
|
| T |
4660995 |
cctattgggttcagcaagagggttgcattatcttcatgctgaggtgaaacacaaaataatacaccgcgacgtaaagagcaccaacatattgttgga |
4660900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 18926562 - 18926669
Alignment:
| Q |
58 |
agagatgattctcgtttatgacttcatgcaacgtggcagtctatgtgaatatctttatggatcagataacaaacctcttacttggaagcagaggcttgag |
157 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||| | ||| ||||| ||||| ||||| || ||||| |||| || ||||||||| ||||||||| |
|
|
| T |
18926562 |
agagatgattctgatttatgagttcatgcaacgtggtactctttgtgagtatctatatggttccaataaccaacccctactttggaagcaaaggcttgag |
18926661 |
T |
|
| Q |
158 |
attctatt |
165 |
Q |
| |
|
||| |||| |
|
|
| T |
18926662 |
attgtatt |
18926669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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