View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18077_low_53 (Length: 245)
Name: NF18077_low_53
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 30370414 - 30370620
Alignment:
| Q |
19 |
aaccgtggcacattcacaatcacattctctctctacaaaatcaatggcttcaacaacacacaataaataaccgttctcatttcattcatttcttcccaaa |
118 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
30370414 |
aaccgtggcacattcacaatcacactctctctctacgaaatcaatggcttcaacaacgcacaataaataactgttctcatttcattcatttcttcacaaa |
30370513 |
T |
|
| Q |
119 |
tgcactttccaatggatttcgcaaaacacattacgactaaaccccccattctcttcacacgcctcctaacctggatcacctcaaccctcccccgctaccg |
218 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30370514 |
tgcactttccaatggatttcgcaaaacacattactactaaaccccccattctcttcacacgcctcctaacctggatcacctcaaccctcccccgctaccg |
30370613 |
T |
|
| Q |
219 |
tcacatt |
225 |
Q |
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||||||| |
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| T |
30370614 |
tcacatt |
30370620 |
T |
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