View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18077_low_55 (Length: 240)
Name: NF18077_low_55
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_low_55 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6359781 - 6359559
Alignment:
| Q |
1 |
ttgtattgatgtgaagtttgaaattgaccgaattcacaacagaattaggcaagatcaacttttcttgcatgcaattttcaatttagtcgatcctagcatt |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6359781 |
ttgtattgatgtgaagtttggaattgaccgaattcacaacagaattaggcaagatcaacttttcttgcatgcaattttcaatttagtcgatcctagcatt |
6359682 |
T |
|
| Q |
101 |
atcattgcactgccttaggcaatgtgaaaacatcccttcaagcatgggaggtcattccaaaaatgttcgctagaaagagcttggaatattagttgaatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6359681 |
atcattgcactgccttaggcaatgtgaaaacatcccatcaagcatgggaggtcattccaaaaatgttcgctagaaagagcttggaatattagttgaatat |
6359582 |
T |
|
| Q |
201 |
aagttgatcttgcctaatctaag |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
6359581 |
aagttgatcttgcctaatctaag |
6359559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 167
Target Start/End: Original strand, 45187461 - 45187576
Alignment:
| Q |
47 |
aggcaagatcaacttttcttgcatgcaattttcaatttagtcgatcctagcattatcattgcactgccttaggcaatgtgaaaacatcccttcaagcatg |
146 |
Q |
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||||||||||||||| |||||||||| ||| ||| || ||| |||||||||||||||| || ||||||||||||| ||| ||||| |||||||| |
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| T |
45187461 |
aggcaagatcaacttatcttgcatgctattatcacttcagttgatcctagcattatca-----ctaccttaggcaatgttcaaatatcccagcaagcatg |
45187555 |
T |
|
| Q |
147 |
ggaggtcattccaaaaatgtt |
167 |
Q |
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||| ||| | | ||||||||| |
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| T |
45187556 |
ggatgtcctccaaaaaatgtt |
45187576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 27416828 - 27416791
Alignment:
| Q |
4 |
tattgatgtgaagtttgaaattgaccgaattcacaaca |
41 |
Q |
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| T |
27416828 |
tattgatgtgaagtttggaattgaccgaattcacaaca |
27416791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 8665751 - 8665787
Alignment:
| Q |
5 |
attgatgtgaagtttgaaattgaccgaattcacaaca |
41 |
Q |
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||||| ||||||||||||||||||||||||||||||| |
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| T |
8665751 |
attgaagtgaagtttgaaattgaccgaattcacaaca |
8665787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 35662780 - 35662816
Alignment:
| Q |
5 |
attgatgtgaagtttgaaattgaccgaattcacaaca |
41 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
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| T |
35662780 |
attgatgtgaagtttggaattgaccgaattcacaaca |
35662816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 54881643 - 54881679
Alignment:
| Q |
5 |
attgatgtgaagtttgaaattgaccgaattcacaaca |
41 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
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|
| T |
54881643 |
attgatgtgaagtttggaattgaccgaattcacaaca |
54881679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 8648490 - 8648526
Alignment:
| Q |
5 |
attgatgtgaagtttgaaattgaccgaattcacaaca |
41 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||| |
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| T |
8648490 |
attgaagtgaagtttgtaattgaccgaattcacaaca |
8648526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 55085271 - 55085235
Alignment:
| Q |
5 |
attgatgtgaagtttgaaattgaccgaattcacaaca |
41 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| |
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|
| T |
55085271 |
attgatgtgaagtttggaattgaccaaattcacaaca |
55085235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 46173702 - 46173739
Alignment:
| Q |
5 |
attgatgtgaagtttgaaattgaccgaattcacaacag |
42 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |
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| T |
46173702 |
attgatgtgaagtttggaattgaccgaattcacaacag |
46173739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 10833 - 10869
Alignment:
| Q |
5 |
attgatgtgaagtttgaaattgaccgaattcacaaca |
41 |
Q |
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|
|||||||||| |||||||||||||||||||||||||| |
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| T |
10833 |
attgatgtgaggtttgaaattgaccgaattcacaaca |
10869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 3772535 - 3772571
Alignment:
| Q |
5 |
attgatgtgaagtttgaaattgaccgaattcacaaca |
41 |
Q |
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|
|||||||||| ||||| |||||||||||||||||||| |
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|
| T |
3772535 |
attgatgtgaggtttggaattgaccgaattcacaaca |
3772571 |
T |
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