View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18077_low_6 (Length: 539)

Name: NF18077_low_6
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18077_low_6
NF18077_low_6
[»] chr4 (14 HSPs)
chr4 (8-525)||(38247719-38248234)
chr4 (75-525)||(38252750-38253199)
chr4 (366-525)||(38213353-38213510)
chr4 (366-525)||(38237257-38237414)
chr4 (376-525)||(38219751-38219898)
chr4 (366-525)||(38242457-38242614)
chr4 (366-517)||(38225846-38225995)
chr4 (8-72)||(38253323-38253387)
chr4 (207-267)||(38242725-38242785)
chr4 (24-66)||(38242976-38243018)
chr4 (29-77)||(38214072-38214120)
chr4 (29-77)||(38226451-38226499)
chr4 (8-66)||(38238001-38238059)
chr4 (209-262)||(38226069-38226122)
[»] chr6 (4 HSPs)
chr6 (366-525)||(17453665-17453822)
chr6 (376-517)||(17432787-17432914)
chr6 (8-77)||(17454547-17454616)
chr6 (23-77)||(17433468-17433522)
[»] chr2 (2 HSPs)
chr2 (468-517)||(11475240-11475289)
chr2 (393-517)||(11486400-11486522)
[»] scaffold0083 (1 HSPs)
scaffold0083 (395-517)||(48989-49109)
[»] chr1 (1 HSPs)
chr1 (472-517)||(21547882-21547927)


Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 8 - 525
Target Start/End: Complemental strand, 38248234 - 38247719
Alignment:
Q  8 gcagcacagatcaataggagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctggaagggtctaatcaatcatgattctgcccct 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38248234 gcagcacagatcaataggagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctggaagggtataatcaatcatgattctgcccct 38248135  T
Q  108 taagagggattctatatttacacctaatatagcattgatacttgagattaaagatgtgtcgtagtgtcggacaccgagacaatattgacattttttatca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38248134 taagagggattctatatttacacctaatatagcattgatacttgagattaaagatgtgtcgtagtgtcggacaccgagacaatattgacattttttatca 38248035  T
Q  208 tatataatcacctctatttgttcatgtaatagttttcaatcgagggtagcaaatgtttaacaaagaagagaatagtatcatatatttgcaatttagtact 307  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38248034 tatataatcacctctatttgttcatgtaatagttttcaatcaagggtagaaaatgtttaacaaagaagagaatagcatcatatatttgcaatttagtact 38247935  T
Q  308 atcagtgtttcttatacttttgatcaagaagtaaccactgtattttttacatttactagttttgtgatatttgtggattatgttttcaggatgggagggt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38247934 atcagtgtttcttatacttttgatcaagaagtaaccactgtattttttacatttactagttttgtgatatttgtggattatgttttcaggatgggagggt 38247835  T
Q  408 tatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacctatatattgtaggaatgtccacatgttatcctaaaccaggtt 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  38247834 tatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacct--atattgtaggaatgtccacatgttatcctaaaccaggtt 38247737  T
Q  508 ctgtcaagattattgatg 525  Q
    ||||||||||||||||||    
T  38247736 ctgtcaagattattgatg 38247719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 75 - 525
Target Start/End: Complemental strand, 38253199 - 38252750
Alignment:
Q  75 tggaagggtctaatcaatcatgattctgccccttaagagggattctatatttacacctaatatagcattgatacttgagattaaagatgtgtcgta-gtg 173  Q
    |||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||  |||||||||  || ||||||||||||||||||||   | |||    
T  38253199 tggaagggtctaatcaataatgattctgcctcttaagagggattccatatttacactcaatatagcaccgacacttgagattaaagatgtgtaacacgtg 38253100  T
Q  174 tcggacaccgagacaatattgacattttttatcatatataatcacctctatttgttcatgtaatagttttcaatcgagggtagcaaatgtttaacaaaga 273  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||| ||||||||||| |||||    
T  38253099 tcggacaccgagacaatattggcattttttatcatatataatcacctctatttgatcatgtaatagttttcgatagagggtaacaaatgtttaataaaga 38253000  T
Q  274 agagaatagtatcatatatttgcaatttagtactatcagtgtttcttatacttttgatcaagaag-taaccactgtattttttacatttactagttttgt 372  Q
    ||||||| || |||||||||||||||||||||| |||  |||||||||||| ||||| | ||||| ||| || |||| ||| || |||  || |||||||    
T  38252999 agagaatggtgtcatatatttgcaatttagtaccatcgatgtttcttatacatttgacccagaagttaaacattgta-tttgtatattagcttgttttgt 38252901  T
Q  373 gatatttgtggattatgttttcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacctatatat 472  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||  |||| |||||||||||||||  ||  |  || ||    
T  38252900 gaaatttgtggattatgttttcaggatgggagggttatatgttcttctataccaaattacggaaagggaagtgaagcaggaaatgaatcaggc--tacat 38252803  T
Q  473 tgtaggaatgtccacatgttatcctaaaccaggttctgtcaagattattgatg 525  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  38252802 tgtaggaatgtccacatgttatcctaaaccaggttctgttaagataattgatg 38252750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 366 - 525
Target Start/End: Complemental strand, 38213510 - 38213353
Alignment:
Q  366 gttttgtgatatttgtggattatgttttcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacc 465  Q
    ||||| ||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  38213510 gttttctgaaatatgtggattatgttttcaggatggaagggttatatgttcttctataccaagttatggaactggaaatgaagcaggaaatgaggcaaac 38213411  T
Q  466 tatatattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagattattgatg 525  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38213410 --tatattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagattattgatg 38213353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 366 - 525
Target Start/End: Complemental strand, 38237414 - 38237257
Alignment:
Q  366 gttttgtgatatttgtggattatgttttcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacc 465  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||  ||||  |||||||||||||| ||        
T  38237414 gttttgtgaaatttgtggattatgttttcaggatggaagggttatatgttcctctataccaagttatggaaatggaagcgaagcaggaaatgaagc--gg 38237317  T
Q  466 tatatattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagattattgatg 525  Q
     ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38237316 gatacattgtaggaatgtccacttgttatcctaaaccaggttctgtcaagattattgatg 38237257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 376 - 525
Target Start/End: Complemental strand, 38219898 - 38219751
Alignment:
Q  376 atttgtggattatgttttcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacctatatattgt 475  Q
    |||| |||||||||||||||||||| |||||||||||| ||||| |||||||| |||||||  ||||| ||||| ||||||||| ||  |  || |||||    
T  38219898 atttatggattatgttttcaggatgagagggttatatgctcttcaataccaagatatggaaatggaaacgaagctggaaatgagacaggc--tacattgt 38219801  T
Q  476 aggaatgtccacatgttatcctaaaccaggttctgtcaagattattgatg 525  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38219800 aggaatgtccacatgttatcctaaaccaggttctatcaagattattgatg 38219751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 366 - 525
Target Start/End: Complemental strand, 38242614 - 38242457
Alignment:
Q  366 gttttgtgatatttgtggattatgttttcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacc 465  Q
    ||||||||| |||  ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||  ||||  |||||||||||||| |         
T  38242614 gttttgtgaaattgatggattatgttttcaggatgggagggttatatgttcttccaaaccaagttatggaaatggaagcgaagcaggaaatgaag--tgg 38242517  T
Q  466 tatatattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagattattgatg 525  Q
     ||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  38242516 gatacattgtaggaatgtccacatgttatcctaaaccaggttcaatcaagattattgatg 38242457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 366 - 517
Target Start/End: Complemental strand, 38225995 - 38225846
Alignment:
Q  366 gttttgtgatatttgtggattatgttttcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacc 465  Q
    |||||| || || ||||||| ||||||||||||||| || ||||||||||| |||||||||||||| ||||  ||||||||||| || |||||| ||  |    
T  38225995 gttttgcgaaatatgtggatcatgttttcaggatggcagagttatatgttcctctataccaagttacggaaatggaaatgaagctgggaatgagacaggc 38225896  T
Q  466 tatatattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagat 517  Q
      || |||||||||||||||||||||||||||||||||||||||||||||||    
T  38225895 --tacattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagat 38225846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 38253387 - 38253323
Alignment:
Q  8 gcagcacagatcaataggagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaa 72  Q
    |||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38253387 gcagcatagatcaaaaggagggaaatgggtgtgttcatgtaaaaaggacaagtctcccactacaa 38253323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 38242785 - 38242725
Alignment:
Q  207 atatataatcacctctatttgttcatgtaatagttttcaatcgagggtagcaaatgtttaa 267  Q
    |||||||||| | ||||||||||||||||||||||||| || |||| ||||||||||||||    
T  38242785 atatataatcccttctatttgttcatgtaatagttttcgattgaggttagcaaatgtttaa 38242725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 38243018 - 38242976
Alignment:
Q  24 ggagggaaatgggtgtgttcatgtgaaaaggacaagtctccca 66  Q
    ||||| ||||||||||||||||||||| |||||||||||||||    
T  38243018 ggaggaaaatgggtgtgttcatgtgaagaggacaagtctccca 38242976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 38214120 - 38214072
Alignment:
Q  29 gaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctgg 77  Q
    ||||||| |||||||||||||  ||||||||||||||||||||| ||||    
T  38214120 gaaatggttgtgttcatgtgatgaggacaagtctcccactacaaactgg 38214072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 38226499 - 38226451
Alignment:
Q  29 gaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctgg 77  Q
    ||||||| |||||| ||||||| ||||||||||||||||||||| ||||    
T  38226499 gaaatggttgtgttgatgtgaagaggacaagtctcccactacaaactgg 38226451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 38238059 - 38238001
Alignment:
Q  8 gcagcacagatcaataggagggaaatgggtgtgttcatgtgaaaaggacaagtctccca 66  Q
    |||||||||| ||  |||||||||||   |||||||||||||| |||||||||||||||    
T  38238059 gcagcacagaccataaggagggaaattcctgtgttcatgtgaagaggacaagtctccca 38238001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 38226122 - 38226069
Alignment:
Q  209 atataatcacctctatttgttcatgtaatagttttcaatcgagggtagcaaatg 262  Q
    |||||||||| |||||||| |||||| |||||||||||| |||| || ||||||    
T  38226122 atataatcacttctatttgatcatgtgatagttttcaattgaggctaacaaatg 38226069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 2e-47; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 366 - 525
Target Start/End: Complemental strand, 17453822 - 17453665
Alignment:
Q  366 gttttgtgatatttgtggattatgttttcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacc 465  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||   ||||||||||||||||||||||||       
T  17453822 gttttgtgaaatttgtggattatgttttcaggatgggagagttatatgttcttctgtaccaagttatggacatggaaatgaagcaggaaatgaggca--g 17453725  T
Q  466 tatatattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagattattgatg 525  Q
      || |||||||||||||| || ||||||||||||||||||||||||||||| |||||||    
T  17453724 ggtacattgtaggaatgtctacttgttatcctaaaccaggttctgtcaagataattgatg 17453665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 376 - 517
Target Start/End: Complemental strand, 17432914 - 17432787
Alignment:
Q  376 atttgtggattatgttttcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacctatatattgt 475  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |  |||||||| |||||               || |||||    
T  17432914 atttgtggattatgttttcaggatgggagggttatatgttcttctacaccaagttatggcaatggaaatgaggcagg--------------gtacattgt 17432829  T
Q  476 aggaatgtccacatgttatcctaaaccaggttctgtcaagat 517  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  17432828 aggaatgtctacttgttatcctaaaccaggttctgtcaagat 17432787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 17454616 - 17454547
Alignment:
Q  8 gcagcacagatcaataggagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctgg 77  Q
    |||||||||| ||  ||||||||||||| |||||||||||||| ||||||||||||||||| ||| ||||    
T  17454616 gcagcacagaccatgaggagggaaatggttgtgttcatgtgaagaggacaagtctcccactgcaaactgg 17454547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 17433522 - 17433468
Alignment:
Q  23 aggagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctgg 77  Q
    |||||| |||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  17433522 aggaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactgg 17433468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 468 - 517
Target Start/End: Original strand, 11475240 - 11475289
Alignment:
Q  468 tatattgtaggaatgtccacatgttatcctaaaccaggttctgtcaagat 517  Q
    ||||||||||||||||| |||||||| ||||||||||||||| |||||||    
T  11475240 tatattgtaggaatgtcaacatgttaccctaaaccaggttctatcaagat 11475289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 393 - 517
Target Start/End: Original strand, 11486400 - 11486522
Alignment:
Q  393 tcaggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacctatatattgtaggaatgtccacatgtt 492  Q
    ||||||||| || ||||||||| |||| || ||||  |||||||  |||||   |||||||||||||  ||   |||| ||||||| ||||| |||||||    
T  11486400 tcaggatggaagagttatatgtacttcaatcccaaaatatggaaaaggaaagagagcaggaaatgag--aaaggatatgttgtaggcatgtcaacatgtt 11486497  T
Q  493 atcctaaaccaggttctgtcaagat 517  Q
    | ||||||||||||||| |||||||    
T  11486498 accctaaaccaggttctatcaagat 11486522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 395 - 517
Target Start/End: Original strand, 48989 - 49109
Alignment:
Q  395 aggatgggagggttatatgttcttctataccaagttatggaaccggaaatgaagcaggaaatgaggcaacctatatattgtaggaatgtccacatgttat 494  Q
    ||||||||| ||| ||||||  ||| | |||||  |||||||  ||||| ||||||||||||||   ||   |||| |||||||||||||||| ||||||    
T  48989 aggatgggaaggtaatatgtaattcaaaaccaaaatatggaaatggaaaggaagcaggaaatgaa--aaaggatatgttgtaggaatgtccacttgttat 49086  T
Q  495 cctaaaccaggttctgtcaagat 517  Q
    ||| ||||||||||| |||||||    
T  49087 cctcaaccaggttctatcaagat 49109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 517
Target Start/End: Original strand, 21547882 - 21547927
Alignment:
Q  472 ttgtaggaatgtccacatgttatcctaaaccaggttctgtcaagat 517  Q
    ||||||||||| |||| ||||||||| ||||||||||| |||||||    
T  21547882 ttgtaggaatgaccacttgttatcctcaaccaggttctatcaagat 21547927  T

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