View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18077_low_64 (Length: 213)
Name: NF18077_low_64
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18077_low_64 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 45293038 - 45292813
Alignment:
| Q |
1 |
tcatgtccctttattttcttctccaatgcttctttctccaacaaagcaaccctaagcaagttattgatatccctattctcttcagttaagcttatcaaac |
100 |
Q |
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| T |
45293038 |
tcatgtccctttattttcttctccaatgcttctttctccaacaaagcaaccctaagcaagttattgatatccctattctcttcagttaagcttatcaaac |
45292939 |
T |
|
| Q |
101 |
tattctccaactctctcttctcctttttccttaactc---------------------ttccacctcagttgcaagccttgatataaaacttgcctcttc |
179 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45292938 |
tattctccaactctctcttctcctttttccttaactccttataattttccacctttgtttccacctcagttgcaagccttgatataaaacttgcctcttc |
45292839 |
T |
|
| Q |
180 |
caataataataccatcgattcatctc |
205 |
Q |
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||||||||| |||||||||||||||| |
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| T |
45292838 |
caataataacaccatcgattcatctc |
45292813 |
T |
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