View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18077_low_66 (Length: 201)

Name: NF18077_low_66
Description: NF18077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18077_low_66
NF18077_low_66
[»] chr4 (2 HSPs)
chr4 (15-186)||(48958628-48958799)
chr4 (20-183)||(48962778-48962941)
[»] chr8 (1 HSPs)
chr8 (92-188)||(12641082-12641178)
[»] chr2 (3 HSPs)
chr2 (87-175)||(13440692-13440780)
chr2 (20-182)||(13448848-13449010)
chr2 (93-176)||(13455325-13455408)
[»] chr6 (2 HSPs)
chr6 (20-188)||(12482993-12483161)
chr6 (82-163)||(12589760-12589841)
[»] chr7 (1 HSPs)
chr7 (91-163)||(3417133-3417205)
[»] chr5 (1 HSPs)
chr5 (125-183)||(28385818-28385876)
[»] scaffold0536 (1 HSPs)
scaffold0536 (143-183)||(6163-6203)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 48958799 - 48958628
Alignment:
Q  15 ttcactgttccaaattttcctcactccatcattttgtgtacaaagccgccaaagatattcaccagattcatgaaaatgatgcttgagacaatcctcaaaa 114  Q
    ||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  48958799 ttcactgttccaaattttcctcattccatcaccttgtgtacaaagccgccaaagatattcaccggattcatggaaatgatgcttgagacaatcctcaaaa 48958700  T
Q  115 gtaagggactcatcatcaacaacttcattgaacttgatggtgaagagtgcatcgaacactacaagaaaatca 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48958699 gtaagggactcatcatcaacaacttcattgaacttgatggtgaagagtgcatcgaacactacaagaaaatca 48958628  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 48962941 - 48962778
Alignment:
Q  20 tgttccaaattttcctcactccatcattttgtgtacaaagccgccaaagatattcaccagattcatgaaaatgatgcttgagacaatcctcaaaagtaag 119  Q
    ||||||||||||||||||||| ||||  ||||| ||||||||||| |||  ||||||| |||||||| ||||| ||| ||||||||| || ||||  ||     
T  48962941 tgttccaaattttcctcactctatcaccttgtgcacaaagccgccgaagtcattcaccggattcatggaaatggtgcatgagacaatgctaaaaacaaat 48962842  T
Q  120 ggactcatcatcaacaacttcattgaacttgatggtgaagagtgcatcgaacactacaagaaaa 183  Q
    ||||||||  |||||||||||  ||||||||| |||||||||||||||||||||||| ||||||    
T  48962841 ggactcattgtcaacaacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaa 48962778  T

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Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 92 - 188
Target Start/End: Original strand, 12641082 - 12641178
Alignment:
Q  92 gatgcttgagacaatcctcaaaagtaagggactcatcatcaacaacttcattgaacttgatggtgaagagtgcatcgaacactacaagaaaatcatg 188  Q
    |||||||||| |||||| |||||||||||||||||| || ||||||||  ||||||||||||||||||| |||||| |||||||  |||||| ||||    
T  12641082 gatgcttgaggcaatccgcaaaagtaagggactcataattaacaactttgttgaacttgatggtgaagattgcatcaaacactatgagaaaaccatg 12641178  T

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Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 87 - 175
Target Start/End: Complemental strand, 13440780 - 13440692
Alignment:
Q  87 aaaatgatgcttgagacaatcctcaaaagtaagggactcatcatcaacaacttcattgaacttgatggtgaagagtgcatcgaacacta 175  Q
    ||||||||||||| |||| | ||||||||||| | |||||||||||||||||||| ||||||||| || |||||||||||| |||||||    
T  13440780 aaaatgatgcttgggacagtgctcaaaagtaaagcactcatcatcaacaacttcactgaacttgacggagaagagtgcatccaacacta 13440692  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 13449010 - 13448848
Alignment:
Q  20 tgttccaaattttcctcactccatcattttgtgtacaaagccgccaaagatattcaccagattcatgaaaatgatgcttgagacaatcctcaaaagtaag 119  Q
    |||||||||||||||||||   ||||  ||||||  ||| ||||||||| || ||   | |||||||  |||||||||||||||  | || ||||||||     
T  13449010 tgttccaaattttcctcaccatatcaccttgtgtggaaaaccgccaaaggtaatcggtatattcatgggaatgatgcttgagacggtgcttaaaagtaaa 13448911  T
Q  120 ggactcatcatcaacaacttcattgaacttgatggtgaagagtgcatcgaacactacaagaaa 182  Q
    | ||| |||||||||||||||| |||||||||||| |||||||||||  |||||||| |||||    
T  13448910 gcactaatcatcaacaacttcagtgaacttgatggagaagagtgcatacaacactacgagaaa 13448848  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 13455408 - 13455325
Alignment:
Q  93 atgcttgagacaatcctcaaaagtaagggactcatcatcaacaacttcattgaacttgatggtgaagagtgcatcgaacactac 176  Q
    ||||||||||||||  | |||||||| | ||| |||||||||||||||| |||| ||||||| |||||||||||| ||||||||    
T  13455408 atgcttgagacaatatttaaaagtaaagcacttatcatcaacaacttcagtgaatttgatggagaagagtgcatccaacactac 13455325  T

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Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 12482993 - 12483161
Alignment:
Q  20 tgttccaaattttcctcactccatcattttgtgtacaaagccgccaaagatattcaccagattcatgaaaatgatgcttgagacaatcctcaaaagtaag 119  Q
    |||||||||||||||||||   ||||  ||||| ||||| || |||||||| ||||| | |||| |  ||||||||||||| ||||| | |||||||||     
T  12482993 tgttccaaattttcctcaccatatcaccttgtgcacaaaaccaccaaagatgttcacaatattcctagaaatgatgcttgaaacaatacacaaaagtaat 12483092  T
Q  120 ggactcatcatcaacaacttcattgaacttgatggtgaagagtgcatcgaacactacaagaaaatcatg 188  Q
     |||||||| |||| | ||||| |||||| |||||  |||| ||| ||||||||||| | |||||||||    
T  12483093 agactcatcgtcaatagcttcactgaactggatggcaaagaatgcgtcgaacactacgaaaaaatcatg 12483161  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 12589760 - 12589841
Alignment:
Q  82 tcatgaaaatgatgcttgagacaatcctcaaaagtaagggactcatcatcaacaacttcattgaacttgatggtgaagagtg 163  Q
    ||||| ||| |||||||||| |||| ||||||||||| ||||||||  | |||||||||  ||||||||||||  |||||||    
T  12589760 tcatggaaacgatgcttgaggcaatactcaaaagtaatggactcattgttaacaacttcgctgaacttgatggccaagagtg 12589841  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 163
Target Start/End: Original strand, 3417133 - 3417205
Alignment:
Q  91 tgatgcttgagacaatcctcaaaagtaagggactcatcatcaacaacttcattgaacttgatggtgaagagtg 163  Q
    |||||||||| ||| |  |||||||||| ||  | ||| ||||||||||||||||||||||||| ||||||||    
T  3417133 tgatgcttgacacagtgttcaaaagtaatggctttatcgtcaacaacttcattgaacttgatggagaagagtg 3417205  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 28385876 - 28385818
Alignment:
Q  125 catcatcaacaacttcattgaacttgatggtgaagagtgcatcgaacactacaagaaaa 183  Q
    |||||||||||||||  ||||||||||||| ||||||||  || |||||||| ||||||    
T  28385876 catcatcaacaactttgttgaacttgatggagaagagtgtgtcaaacactacgagaaaa 28385818  T

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Target: scaffold0536 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 6163 - 6203
Alignment:
Q  143 tgaacttgatggtgaagagtgcatcgaacactacaagaaaa 183  Q
    ||||||||| |||||||||| ||||||||||||| ||||||    
T  6163 tgaacttgacggtgaagagtacatcgaacactacgagaaaa 6203  T

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