View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_high_13 (Length: 447)
Name: NF18078_high_13
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_high_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 11 - 447
Target Start/End: Complemental strand, 44017417 - 44016987
Alignment:
| Q |
11 |
agcagagacaaagatagttaaggtacattctggtatatgtctaagataacaaatagaaagctttgtccattcctttttgaccattctctcatctctatta |
110 |
Q |
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| T |
44017417 |
agcagagacaaagatagttaaggtacattctggtatatgtctaagataacaaatagaaagctttgtccattcctttttgaccattctctcatctctatta |
44017318 |
T |
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| Q |
111 |
tctcccttcttaaacatactacttgacactatctctttttgtttcacatgcttttgtttaaaacgtttgtgtgaaacttaagcatcatgcatgtgctctc |
210 |
Q |
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| T |
44017317 |
tctcccttcttaaacatactacttgacactatctctttttgtttcacatgcttgtgtttaaaacgtttgtgtgaaacttaagcatcatgcatgtgctctc |
44017218 |
T |
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| Q |
211 |
ctaaactagtagtcttttattaccttcaccttcaccttcaccctcatcttctacattaatctccgactccaagtaaagccaccattttcacaatcaaaaa |
310 |
Q |
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| T |
44017217 |
ctaaactagtagtcttttatcaccttcacctt------caccctcatcttctacattaatctccaactccaagtaaagtcaccattttcacaatcaaaaa |
44017124 |
T |
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| Q |
311 |
tggaaaatattagtgttacctctttgttcttttgcttactcttttttagcataacaaagatacaagtaataacttctctttcacctgatggacaagcact |
410 |
Q |
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| T |
44017123 |
tggaaaatattagtgttacctctttgttcttttgcttactcttttttagcataacaaagatacaagtaataacttctctttcacctgatggacaagcact |
44017024 |
T |
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| Q |
411 |
tctttctcttgcaacatcatcaccttctattctctct |
447 |
Q |
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| T |
44017023 |
tctttctcttgcaacatcatcaccttctattctctct |
44016987 |
T |
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Back To:
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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 31037093 - 31037218
Alignment:
| Q |
79 |
attcctttttgaccattctctc--atctctattatctcccttcttaaacatac---tacttgacactatctctttttgtttcacatgcttttgtttaaaa |
173 |
Q |
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|||||||||||| ||||||||| | ||||||| ||| |||||||||| ||| ||||||||| |||||| ||| | |||||| || ||| |||| |
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| T |
31037093 |
attcctttttgaacattctctctcagctctattttcttccttcttaaagataacaatacttgacaatatctcctttcatgtcacattctagtgtcgaaaa |
31037192 |
T |
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| Q |
174 |
cgtttgtgtgaaacttaagcatcatg |
199 |
Q |
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| T |
31037193 |
catttgtgtgaaacctaagcatcatg |
31037218 |
T |
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