View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_high_18 (Length: 414)
Name: NF18078_high_18
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 393
Target Start/End: Complemental strand, 41900147 - 41899770
Alignment:
| Q |
16 |
atgacttagctgaacttattaatacaacttttttaaagcgtaagagatgtatgtttcttgcgggttgtgccaaattcttagggtggctttgtgagcacta |
115 |
Q |
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| T |
41900147 |
atgacttagttgaacttattaatacaacttttttaaagcgtaagagatgtatgtttcttgcgagttgtgcaaaattcttagggtggctttgtgagcacta |
41900048 |
T |
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| Q |
116 |
aagcttacttaatcaacaaactcaagattcatattgaggttttggagtgggaatccgacatactactctagttttaatggtttcagagctttgacgttta |
215 |
Q |
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| T |
41900047 |
aagcttacttaatcaacaaactcaagattcatattgaagttttggagtggaaatccgacatactactctagttttaatggtttcagagctttgacgttta |
41899948 |
T |
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| Q |
216 |
cacttattaaacaagacaaacttaatgctagagctatgacacatgtcttcattatttattttgaaggtataaagggttacaagttgttcaagatggaacc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
41899947 |
cacttattaaacaagacaaacttaatgctagagctatgacacatgtcttcattagttatcttgaaggtgtaaagggttacaagttgttcaagatggaacc |
41899848 |
T |
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| Q |
316 |
ttaaggatgattaggtatcataaataagtattaatgctatttttagcgaaacccgcatggggatgaagtgcaaagacc |
393 |
Q |
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| T |
41899847 |
ttaaggatgattaggtatcataaataagtattaatgctacttttagcgaaacccgcatggggatgaagtgcaaagacc |
41899770 |
T |
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