View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_high_2 (Length: 717)
Name: NF18078_high_2
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-138; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 50631512 - 50631219
Alignment:
| Q |
1 |
gaagttgaaaattggatttggacctgcagacattaaacttagttttcactagtccaacnnnnnnnn-ctcttttgatgcagaatggaaactgttgttggt |
99 |
Q |
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| T |
50631512 |
gaagttgaaaattggatttggacctgcagacattaaacttagttttcactagaccaactttttttttctcttttgatgcagaatggaaactgttgttggt |
50631413 |
T |
|
| Q |
100 |
gtccatttcctaattgaaagtgattgttttgtcaacttcaattaaatttctttgtcgggtcagagatagtgagaggaagaatcacatgtctatagctatt |
199 |
Q |
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| T |
50631412 |
gtccatttcctaattgaaagtgattgttttgtcaacttcaattaaatttctttgtcgggtcagggatagtgagatgaagaatcacatgtctatagctatt |
50631313 |
T |
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| Q |
200 |
ccatagcacttatctatatatacagtccaaattggcatgattgtatctcaactgaaactggcaagagtcacaccaacattgaagtgggaattta |
293 |
Q |
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| T |
50631312 |
ccatagcacttatctatatatacagtccaaattggcatgattgtatctcaactgaaactggcaagagtcacaccaacattgaagtgggaattta |
50631219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 467 - 658
Target Start/End: Complemental strand, 50626190 - 50625999
Alignment:
| Q |
467 |
attataggtgtgatcatactagtactaatgcatcgaattccatcacaatttcgtagttaagtgtgtttggacgagagtatattatttggatgggtgacct |
566 |
Q |
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| T |
50626190 |
attataggtgtgatcattctagtactaatgcattagattccatcacaattttgtagttaagtgtgtttggacgagagtatattattaagatgggtgacct |
50626091 |
T |
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| Q |
567 |
cctgcgaagttccgaccctttttaagtaaccaaaaataaaatttaacaattatttttgcgggatagttagattgttatataatgcttttttt |
658 |
Q |
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| T |
50626090 |
cctgcgaagttccgaccctttttaagtaaccaaaaataaaatttaacaattatttttgcggaatagttagattgttatataatgcttttttt |
50625999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 358 - 473
Target Start/End: Complemental strand, 50631102 - 50630989
Alignment:
| Q |
358 |
acacaacaatgtgcattttatttaaaaatttcttcattttgagtttaaaaattatacatacttcaattgtaaatacagatattcatatctcatataatgg |
457 |
Q |
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| T |
50631102 |
acacaacaatgtgcattttatttaaaaatttcttcattttgagtttaaaaatta--catacttcaattgtaaatacagatattcatatctcatataatgg |
50631005 |
T |
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| Q |
458 |
tcatatttcattatag |
473 |
Q |
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| T |
50631004 |
tcatatttcattatag |
50630989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 472 - 576
Target Start/End: Complemental strand, 24620882 - 24620777
Alignment:
| Q |
472 |
aggtgtgatcatactagtactaatgcatcgaattccatcacaatttcgtagttaagtgtgtttggacgagagta-tattatttggatgggtgacctcctg |
570 |
Q |
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||||| |||||||| || ||||||||| || || |||||| || | || ||||||| ||| |||| |||||||| || || |||||||||||||||||| |
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| T |
24620882 |
aggtgcgatcataccagcactaatgcaccggatcccatcagaactccgcagttaagcgtgcttgggcgagagtagtactagntggatgggtgacctcctg |
24620783 |
T |
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| Q |
571 |
cgaagt |
576 |
Q |
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||||| |
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| T |
24620782 |
ggaagt |
24620777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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