View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18078_high_22 (Length: 386)
Name: NF18078_high_22
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_high_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 33827131 - 33827501
Alignment:
| Q |
1 |
tgagatgaggttatcaattcaacaagcaaatagaccattgacagtttgtatactgataatgtacgttttctttccgttgccaagtgagaaattgaccaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
33827131 |
tgagatgaggttatcaattcaacaagcaaatagaccattgacagtttgtatactgataatgtacgttttctttccgttgccaagtaataaattgaccaaa |
33827230 |
T |
|
| Q |
101 |
catatatttaaaaagatttgtagttgtcatgtcaagcttggttggtagtcatattcagatttctcagtcgtttctttctactgtgagtaa-gtctaacca |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| ||||||| ||| ||||||||| |
|
|
| T |
33827231 |
catatatttaaaaagatttgtagttgtcatgtcaagcttggttggtagtcatattcagatttctcacttgattctttttactgtgcctaaggtctaacca |
33827330 |
T |
|
| Q |
200 |
ctaaataaatgaaggtgaacacataatctcgctgaggtggctgtgattagatgacgtgtccagttgggataaatgtttgctgactcgtaatatttgatat |
299 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||| || |||||||||| || |
|
|
| T |
33827331 |
-taaataaatgaaggtaaacacataatctcgcggaggtggctgtgattagaagacgtgtccagttgggataagtgtttgctgattcataatatttgacat |
33827429 |
T |
|
| Q |
300 |
gaatggacagaaatattcttaatttttgagatgaatttgtgaaatgtgatgaatttgcacgactgtgataag |
371 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33827430 |
gaatggacagaaatactcttaatttttgagatgaatttgtgaaatgtgatgaatttgcatgactgtgataag |
33827501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 33840834 - 33840464
Alignment:
| Q |
1 |
tgagatgaggttatcaattcaacaagcaaatagaccattgacagtttgtatactgataatgtacgttttctttccgttgccaagtgagaaattgaccaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
33840834 |
tgagatgaggttatcaattcaacaagcaaatagaccattgacagtttgtatactgataatgtacgttttctttccgttgccaagtaataaattgaccaaa |
33840735 |
T |
|
| Q |
101 |
catatatttaaaaagatttgtagttgtcatgtcaagcttggttggtagtcatattcagatttctcagtcgtttctttctactgtgagtaa-gtctaacca |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| ||||||| ||| ||||||||| |
|
|
| T |
33840734 |
catatatttaaaaagatttgtagttgtcatgtcaagcttggttggtagtcatattcagatttctcacttgattctttttactgtgcctaaggtctaacca |
33840635 |
T |
|
| Q |
200 |
ctaaataaatgaaggtgaacacataatctcgctgaggtggctgtgattagatgacgtgtccagttgggataaatgtttgctgactcgtaatatttgatat |
299 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||| || |||||||||| || |
|
|
| T |
33840634 |
-taaataaatgaaggtaaacacataatctcgcggaggtggctgtgattagaagacgtgtccagttgggataagtgtttgctgattcataatatttgacat |
33840536 |
T |
|
| Q |
300 |
gaatggacagaaatattcttaatttttgagatgaatttgtgaaatgtgatgaatttgcacgactgtgataag |
371 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33840535 |
gaatggacagaaatactcttaatttttgagatgaatttgtgaaatgtgatgaatttgcatgactgtgataag |
33840464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 260
Target Start/End: Original strand, 37991320 - 37991358
Alignment:
| Q |
222 |
ataatctcgctgaggtggctgtgattagatgacgtgtcc |
260 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
37991320 |
ataatctcgctgaggtggcagtgattagctgacgtgtcc |
37991358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University