View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_high_28 (Length: 375)
Name: NF18078_high_28
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 48 - 161
Target Start/End: Complemental strand, 50590737 - 50590624
Alignment:
| Q |
48 |
tctcgtcggacagctccaccgttgctgtttgggttgctgttttcgagcttgggtgtccctttctgctatgtctcgtgggtccgtccgttgtcgggtgctc |
147 |
Q |
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| T |
50590737 |
tctcgtcggacagctccactgttgctgtttgggtggctgttttcgagcttgggtgtccctttctgctatgtctcgtgggtctgtccgttgtcgggtgctc |
50590638 |
T |
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| Q |
148 |
gccgaagttttggg |
161 |
Q |
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|||| ||||||||| |
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| T |
50590637 |
gccggagttttggg |
50590624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 50590558 - 50590490
Alignment:
| Q |
229 |
cgtatttattctttggtgttgttattccttttacggtggttgtggcgtgggtgcttgtacctcgtcgga |
297 |
Q |
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| T |
50590558 |
cgtatttattctttggtgttgttattccttttacggtggttgtggcgtgggtgcttgtacctcgtcgga |
50590490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 50590775 - 50590740
Alignment:
| Q |
20 |
ctattttctgcgattctctttgttccgatctcgtcg |
55 |
Q |
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| T |
50590775 |
ctattttctgcgattctctttgctccgatctcgtcg |
50590740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 63 - 161
Target Start/End: Original strand, 16958681 - 16958779
Alignment:
| Q |
63 |
ccaccgttgctgtttgggttgctgttttcgagcttgggtgtccctttctgctatgtctcgtgggtccgtccgttgtcgggtgctcgccgaagttttggg |
161 |
Q |
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| T |
16958681 |
ccaccgttgctgtttgggtggctgttttcgagtttgggtgtccctttctgctatgtttagtgggtccgtccgttgtcgggtgctcgccggagttttggg |
16958779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 16958851 - 16958900
Alignment:
| Q |
248 |
tgttattccttttacggtggttgtggcgtgggtgcttgtacctcgtcgga |
297 |
Q |
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| T |
16958851 |
tgttcttccttttacggcggttgtggcatgggtgcttgtacctcgccgga |
16958900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 17078763 - 17078812
Alignment:
| Q |
248 |
tgttattccttttacggtggttgtggcgtgggtgcttgtacctcgtcgga |
297 |
Q |
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| T |
17078763 |
tgttcttccttttacggcggttgtggcatgggtgcttgtacctcgccgga |
17078812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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