View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_high_34 (Length: 349)
Name: NF18078_high_34
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 45 - 334
Target Start/End: Complemental strand, 6862681 - 6862392
Alignment:
| Q |
45 |
cctgacacataaacacatgatttgataccaataattatgaatcttgcaatgaacatttagaggtttcaaaatggcaacgtatgtcaatctggcacactaa |
144 |
Q |
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| T |
6862681 |
cctgacacataaacacatgatttgataccaataattatgaatcttgcaatgaacatttagaggtttcaaaatggcaacgtatatcaatctggcacactaa |
6862582 |
T |
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| Q |
145 |
tatttaagtgcagcatactatataatagtatcaatttaaagagagaaaattataagcaaatgtgctaatgacaccacataaacaaccattatctccttta |
244 |
Q |
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| T |
6862581 |
tatttaagtgcagcatactatataatagtatcaatttaaagagagaaaattataagcaaatgtgctaatgacaccacataaacaaccattatctccttta |
6862482 |
T |
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| Q |
245 |
ctttacagtcacaagtctgtttttaatgtgataccaagcgtcggcatatcctaaggtatatatttcaacccaaaatcaaacccttctctg |
334 |
Q |
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| T |
6862481 |
ctttacagtcacaagtctgtttttaatgtaataccaagcgtcggcatatcctaaggtacatatttcaacccaaaatcaaacccttctctg |
6862392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 196 - 297
Target Start/End: Complemental strand, 6857605 - 6857503
Alignment:
| Q |
196 |
ataagcaaatgtgctaatgacaccacataaacaaccattatctcctttactttacagtcacaagtctgtttt-taatgtgataccaagcgtcggcatatc |
294 |
Q |
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| T |
6857605 |
ataagcaaatgtgctaatgacaccacataaaaaactattatcaccatcactttaccgtcactaatctgttttctaatgtgataccaaccgtcggcgtatc |
6857506 |
T |
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| Q |
295 |
cta |
297 |
Q |
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||| |
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| T |
6857505 |
cta |
6857503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 6857768 - 6857700
Alignment:
| Q |
53 |
ataaacacatgatttgataccaataattatgaatcttgcaat-gaacatttagaggtttcaaaatggca |
120 |
Q |
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| T |
6857768 |
ataaacacatgatatgaaaccaataattatgaattttgtagtaaaacatttgaaggtttcaaaatggca |
6857700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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