View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18078_high_39 (Length: 312)
Name: NF18078_high_39
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_high_39 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 46639982 - 46640265
Alignment:
| Q |
19 |
tctccaacatacacacat---ttatataaattcgcattcccataacacaaaatcaaacccatccattatcagtaatggaatcctcttatagtctacaatt |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46639982 |
tctccaacatacacacaccccttatataaattcacattcccataacacaaaatcaaacccatccattatcagtaatggaatcctcttatagtctacaatt |
46640081 |
T |
|
| Q |
116 |
cttaattaccttcattgtcattctcatatccatcaacccctcatcacaccaatctctaccaccactaaacccaagactcaccaaagcctacatagcactc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46640082 |
cttaattaccttcattgtcattctcatatccatcaacccctcatcacaccaatctctaccaccactaaacccaagactcaccaaagcctacatagcactc |
46640181 |
T |
|
| Q |
216 |
caagcatggaaacaaacattcacctcagacccaaaaaacaccaccttaaactggtatggcccaaatgtatgcaactacacaggt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46640182 |
caagcatggaaacaaacattcacctcagacccaaaaaacaccaccttaaactggtatggcccaaatgtatgcaactacacaggt |
46640265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 46642277 - 46642557
Alignment:
| Q |
19 |
tctccaacatacacacatttatataaattcgcattcccataacacaaaatcaaacccatccattatcagtaatggaatcctcttatagtctacaattctt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | || |||| |
|
|
| T |
46642277 |
tctccaacatacacacatttatataaattcacattcccataacacaaaatcaaacccatccattatcggtaatggaatcctcttatagtccaaaactctt |
46642376 |
T |
|
| Q |
119 |
aattaccttcattgtcattctcatatccatcaacccctcatcacaccaatctctaccaccactaaacccaagactcaccaaagcctacatagcactccaa |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
46642377 |
aatttccttcattgtcattctcatatccatcaacccctcatcacaccaatctctaccaccactaaatccaagactcaccaaagcctacatagcactccaa |
46642476 |
T |
|
| Q |
219 |
gcatggaaacaaacattcacctcagacccaaaaaacaccaccttaaactggtatggcccaaatgtatgcaactacacaggt |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46642477 |
gcatggaaacaaacattcacctcagacccaaaaaacaccactttaaactggtatggcccaaatgtatgcaactacacaggt |
46642557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University