View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_high_43 (Length: 302)
Name: NF18078_high_43
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_high_43 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 5 - 286
Target Start/End: Original strand, 22505276 - 22505557
Alignment:
| Q |
5 |
cacctaaagtctggcttagacaattggtcatatcatggttttagcatcctttaggaataattttatagtcctttgagtcattttaggtttgttttagtag |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||| |
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| T |
22505276 |
cacctaaagtctggcttagacaattggtcatatcatggttttagcatcctttaggaatcattttatagtcctttgtgtcattttaagtttgttttagtag |
22505375 |
T |
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| Q |
105 |
agtttagcaaaaagtgaagaaattaacattgcactcaaaatatacaatgtacattgaaaccggctcgaattcaccctaaccagacaactctagtcgtgct |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22505376 |
agtttagcaaaaagtgaagaaattaacattgcactcaaaatatacgaagtacattgaaaccggctcgaattcaccctaaccagacaactctagtcgtgct |
22505475 |
T |
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| Q |
205 |
atgctttttacaagagcaatgaagttgtctcttaggtataaccatcacaggcgctacgttgaaaagaaataaggaaaagagt |
286 |
Q |
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| T |
22505476 |
atgctttttacaagagcaatgaagttgtctcttaggtataaccatcacagacgctacgttgaaaagaaataaggaaaagagt |
22505557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 16256011 - 16256044
Alignment:
| Q |
85 |
ttttaggtttgttttagtagagtttagcaaaaag |
118 |
Q |
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| T |
16256011 |
ttttaggtttgttttagtagtgtttagcaaaaag |
16256044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 64 - 237
Target Start/End: Complemental strand, 36542367 - 36542190
Alignment:
| Q |
64 |
attttatagtcctttgagtcatttt-aggtttgttttagtagagtttagcaaaaagtgaagaaattaacattgcactcaaaatatacaatg--tacattg |
160 |
Q |
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|||||| | ||||||||| |||| | ||| |||||||||||||||||||| | || |||||||||||||| || ||| ||||||||||| | || ||| |
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| T |
36542367 |
attttacaatcctttgagccattatcaggcttgttttagtagagtttagctagaactgaagaaattaacactgtactaaaaatatacaaagaagaccttg |
36542268 |
T |
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| Q |
161 |
aaaccggctcgaattcaccctaaccagacaactc--tagtcgtgctatgctttttacaagagcaatgaagttgtctctt |
237 |
Q |
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|||| |||||||||||| |||||||||||||||| | || |||||||| ||||||||||| |||| |||||||||||| |
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| T |
36542267 |
aaactggctcgaattca-cctaaccagacaactcaatggttgtgctatgttttttacaagaacaatcaagttgtctctt |
36542190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 32007605 - 32007668
Alignment:
| Q |
173 |
attcaccctaaccagacaactct--agtcgtgctatgctttttacaagagcaatgaagttgtct |
234 |
Q |
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| T |
32007605 |
attcaccctaaccaaacaactttgcagtcgtgatatgctttttacaagagaaatcaagttgtct |
32007668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 15692559 - 15692481
Alignment:
| Q |
158 |
ttgaaaccggctcgaattcaccctaaccagacaactcta--gtcgtgctatgctttttacaagagcaatgaagttgtct |
234 |
Q |
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| T |
15692559 |
ttgaaatctgctcaaattcaccccaaccagacaactcctcggtcatgctatgatttttacaagagcaatcaagttgtct |
15692481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 23053 - 23134
Alignment:
| Q |
158 |
ttgaaaccggctcgaattcaccctaaccagacaactct--agtcgtgctatgctttttacaagagcaatgaagttgtctctt |
237 |
Q |
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| T |
23053 |
ttgaaaccggctcgaattcataataaccatacaactttgcagtcgtgctatgctttttacaagagaaatcaagttatctctt |
23134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 35189556 - 35189637
Alignment:
| Q |
158 |
ttgaaaccggctcgaattcaccctaaccagacaac--tctagtcgtgctatgctttttacaagagcaatgaagttgtctctt |
237 |
Q |
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|||||| ||| |||||||||||||||||| ||||| | | |||||||||| ||||||| ||||| ||| |||| ||||||| |
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| T |
35189556 |
ttgaaatcggatcgaattcaccctaaccatacaactgtgtggtcgtgctatactttttaaaagagaaatcaagtggtctctt |
35189637 |
T |
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