View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_high_48 (Length: 280)
Name: NF18078_high_48
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_high_48 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 25375376 - 25375111
Alignment:
| Q |
1 |
cactgtgacttggactcttggagaaggaggttaaaggaagaaagatttaaccattagccaacaatttctcatgaaacattttattgcattaaatttctca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25375376 |
cactgtgacttggactcttggagaaggaggttaaaggaagaaagatttaaccattagccaacaatttctcatgaaacattttattgcattaaatttctca |
25375277 |
T |
|
| Q |
101 |
tttaatgccttcaccaatatcttttccataatagttacaaagaagaaacagtttctgtgtcattttaatttaatgccaccgtctatctttgattctcatg |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25375276 |
tttaatgccttcaccaatattttttccataatagttacaaagaagaaacagtttctgtgtcattttaatttaatgccaccgtctatctttgattctcatg |
25375177 |
T |
|
| Q |
201 |
ttcttgtctgcattgcaaccacctttcaacactctcctttcatctatctttttcagttttagattt |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25375176 |
ttcttgtctgcattgcaaccacctttcaacactctcctttcatctatctttttcagttttagattt |
25375111 |
T |
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