View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_high_55 (Length: 252)
Name: NF18078_high_55
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_high_55 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 39516108 - 39515875
Alignment:
| Q |
1 |
cttaagtttcttaaacaggaagcatatctttcaaaatgttgcagcttaagtccttgtctaattgtgtgcttatggtattgaatgtccaggcctctcaaga |
100 |
Q |
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| T |
39516108 |
cttaagtttcttaaacaggaagcatatctttcaaaatgttgcagcttaagtccttgtctaattatgtgctcatggtattgaatgtccaggcctctcaaga |
39516009 |
T |
|
| Q |
101 |
aaacacggtcatagattataaagactggcaaattcctcttgggcgtcggtttaggtgcgtctttgaaatttttcctttagaaaaccatgtctttgctctc |
200 |
Q |
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| T |
39516008 |
aaacacggtcatagattataaagactggcaaattcctcttgggcgtcggtttaggtgcgtctttgaaatttttcctttagaaaaccatgtctttgctctc |
39515909 |
T |
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| Q |
201 |
tattaacatatatacatgtgtgtatgtggtgttc |
234 |
Q |
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| T |
39515908 |
tattaacatatatacatgtgtgtatgtggtgttc |
39515875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 6 - 215
Target Start/End: Complemental strand, 39529002 - 39528794
Alignment:
| Q |
6 |
gtttcttaaacaggaagcatatctttcaaaatgttgcagcttaagtccttgtctaattgtgtgcttatggtattgaatgtccaggcctctcaagaaaaca |
105 |
Q |
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| T |
39529002 |
gtttcttaaacactaggcatatctttcacattcttgcagcttgagttcttgtctaattgtggtcttttggtattgaattttaaggcctctcaaggaaaca |
39528903 |
T |
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| Q |
106 |
cggtcatagattataaagactggcaaattcctcttgggcgtcggtttaggtgcgtctttgaaatttttcctttagaaaaccatgtctttgctctctatta |
205 |
Q |
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| T |
39528902 |
tggtcatagattacaaagattggcaaattccgcttggacgtcgttttaggtgtgtctttggaattttt-ctttagaaactcttgtctttgctttctatta |
39528804 |
T |
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| Q |
206 |
acatatatac |
215 |
Q |
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| T |
39528803 |
acagatatac |
39528794 |
T |
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