View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18078_high_57 (Length: 250)

Name: NF18078_high_57
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18078_high_57
NF18078_high_57
[»] chr4 (4 HSPs)
chr4 (1-238)||(26949104-26949341)
chr4 (22-238)||(25141293-25141509)
chr4 (20-121)||(37061094-37061195)
chr4 (19-121)||(54027746-54027848)
[»] chr3 (3 HSPs)
chr3 (3-234)||(27167381-27167613)
chr3 (20-126)||(49499399-49499505)
chr3 (131-234)||(21160789-21160892)
[»] scaffold0146 (1 HSPs)
scaffold0146 (1-228)||(24072-24300)
[»] chr2 (6 HSPs)
chr2 (1-234)||(43870267-43870500)
chr2 (1-231)||(43864588-43864819)
chr2 (19-139)||(11818487-11818607)
chr2 (1-148)||(40473041-40473189)
chr2 (1-92)||(32076970-32077062)
chr2 (1-73)||(29694491-29694564)
[»] chr7 (5 HSPs)
chr7 (130-232)||(31805401-31805502)
chr7 (20-126)||(48100785-48100891)
chr7 (2-115)||(29738790-29738904)
chr7 (42-121)||(27810469-27810548)
chr7 (81-126)||(33611139-33611184)
[»] chr1 (6 HSPs)
chr1 (29-126)||(4614879-4614976)
chr1 (20-121)||(13288081-13288182)
chr1 (1-92)||(44312839-44312931)
chr1 (19-139)||(24065189-24065309)
chr1 (35-87)||(42474496-42474548)
chr1 (35-133)||(41117171-41117269)
[»] chr6 (6 HSPs)
chr6 (29-139)||(23508904-23509014)
chr6 (35-204)||(16323338-16323507)
chr6 (35-204)||(16335486-16335655)
chr6 (1-115)||(34433549-34433664)
chr6 (68-118)||(21699303-21699353)
chr6 (22-166)||(16436430-16436574)
[»] chr5 (8 HSPs)
chr5 (1-234)||(28793052-28793285)
chr5 (1-92)||(13907622-13907714)
chr5 (52-126)||(19237655-19237729)
chr5 (76-121)||(6783307-6783352)
chr5 (19-115)||(40299902-40299998)
chr5 (131-234)||(5615502-5615605)
chr5 (67-121)||(22786130-22786184)
chr5 (19-115)||(26683477-26683573)
[»] chr8 (5 HSPs)
chr8 (1-92)||(28417581-28417673)
chr8 (1-92)||(33213624-33213716)
chr8 (31-125)||(37590093-37590187)
chr8 (54-139)||(2246800-2246885)
chr8 (39-115)||(42080464-42080540)
[»] scaffold0019 (1 HSPs)
scaffold0019 (29-115)||(73392-73478)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 26949341 - 26949104
Alignment:
Q  1 tcaatacaagaagggaacgaaaataagtaacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaa 100  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26949341 tcaatacaagaagggaacgaaaataagtaacaggactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaa 26949242  T
Q  101 ctccaccctagagtttgtaaagaaagcagtaaatagagatttgcaagagttgataatatgaccaaactcggagacatcttttctacgggaatggaaaaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26949241 ctccaccctagagtttgtaaagaaagcagtaaatagagatttgcaagagttgataatatgaccaaactcggagacatcttttctacgggaatggaaaaca 26949142  T
Q  201 tcacgggtaattttataatcaatctcaaaatcaatatt 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26949141 tcacgggtaattttataatcaatctcaaaatcaatatt 26949104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 22 - 238
Target Start/End: Complemental strand, 25141509 - 25141293
Alignment:
Q  22 aataagtaacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaactccaccctagagtttgtaaa 121  Q
    ||||| ||| || ||||||||||||||| |||||| ||||||| |||||||| ||  ||||||||||||||     |||||| || | ||||||||| ||    
T  25141509 aataaataatgggactagctagaaatgtcgcctcttctgcaagggcatgagcagctgcatttgcttgtcgccggataaactctactcaagagtttgtgaa 25141410  T
Q  122 gaaagcagtaaatagagatttgcaagagttgataatatgaccaaactcggagacatcttttctacgggaatggaaaacatcacgggtaattttataatca 221  Q
    |||||| | |||||||| |||||||||  ||||||| | ||||||||| || || |||  || |||||| |||||| ||||||  ||||||||  | |||    
T  25141409 gaaagcggaaaatagagctttgcaagatgtgataatgttaccaaactctgaaacgtctcctcgacgggactggaaagcatcacatgtaatttttgagtca 25141310  T
Q  222 atctcaaaatcaatatt 238  Q
    | ||| |||||||||||    
T  25141309 agctcgaaatcaatatt 25141293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 37061094 - 37061195
Alignment:
Q  20 aaaataagtaacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaactccaccctagagtttgta 119  Q
    |||||||  ||||| ||||||||||||  | || |||| ||||||| |||||||  ||||||||| ||||| | ||| |||||||||||||||||| |||    
T  37061094 aaaataaacaacgggactagctagaaacatggcttctcttgcaagcacatgagcaaccacatttgtttgtcacctagcaaactccaccctagagttggta 37061193  T
Q  120 aa 121  Q
    ||    
T  37061194 aa 37061195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 54027746 - 54027848
Alignment:
Q  19 gaaaataagtaacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaactccaccctagagtttgt 118  Q
    |||||||| || ||| | |||| |||||||| || || ||| |||| |  |||||  ||||||| ||||||||| || ||||||||||||||||||| ||    
T  54027746 gaaaataaatagcgggagtagcgagaaatgtggcttcccctacaagagtgtgagccaccacattagcttgtcgcctaaaaaactccaccctagagttggt 54027845  T
Q  119 aaa 121  Q
    |||    
T  54027846 aaa 54027848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 27167613 - 27167381
Alignment:
Q  3 aatacaagaaggga-acgaaaataagtaacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaac 101  Q
    ||||||||| |||| ||||||||||||||| | || || |||||||||||||||||| |||||||||||||||||| |||||||||||| | ||||||||    
T  27167613 aatacaagaggggatacgaaaataagtaaccggacgagttagaaatgttgcctctcccgcaagcgcatgagcggccgcatttgcttgtcacctagaaaac 27167514  T
Q  102 tccaccctagagtttgtaaagaaagcagtaaatagagatttgcaagagttgataatatgaccaaactcggagacatcttttctacgggaatggaaaacat 201  Q
    || ||||||||||||||||||||  | ||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||  |||||||||| |||    
T  27167513 tctaccctagagtttgtaaagaatactgtaaatagagatttgcaagaagtgataatatgaccaaactcggagacatcttctctataggaatggaaagcat 27167414  T
Q  202 cacgggtaattttataatcaatctcaaaatcaa 234  Q
    || ||||||||||| ||||||||||||||||||    
T  27167413 caggggtaattttagaatcaatctcaaaatcaa 27167381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 49499505 - 49499399
Alignment:
Q  20 aaaataagtaacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaactccaccctagagtttgta 119  Q
    ||||||| |||||  |||||||||||| || || |||| ||||||  ||||||| |||||||||||||||||| ||| |||||||||||||||||| |||    
T  49499505 aaaataaataacgagactagctagaaacgtggcttctcttgcaagaacatgagcagccacatttgcttgtcgcctagcaaactccaccctagagttggta 49499406  T
Q  120 aagaaag 126  Q
    || ||||    
T  49499405 aaaaaag 49499399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 234
Target Start/End: Original strand, 21160789 - 21160892
Alignment:
Q  131 aaatagagatttgcaagagttgataatatgaccaaactcggagacatcttttctacgggaatggaaaacatcacgggtaattttataatcaatctcaaaa 230  Q
    |||||||| |||||||||  |||| | ||| ||||||||||| || || | || ||||||||||||| |||| |  |||| |||| |||||| |||||||    
T  21160789 aaatagagctttgcaagatgtgatgacatgcccaaactcggaaacttcatctcaacgggaatggaaagcatcgcatgtaactttagaatcaagctcaaaa 21160888  T
Q  231 tcaa 234  Q
    ||||    
T  21160889 tcaa 21160892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 24300 - 24072
Alignment:
Q  1 tcaatacaagaaggga-acgaaaataagtaacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaa 99  Q
    ||||||||||| |||| || |||||||||| ||| ||||| ||||||||||||||||||||||||||||||||  ||  ||||||||||| || ||||||    
T  24300 tcaatacaagatgggatactaaaataagtagcgggactaggtagaaatgttgcctctcctgcaagcgcatgagttgctgcatttgcttgttgcctagaaa 24201  T
Q  100 actccaccctagagtttgtaaagaaagcagtaaatagagatttgcaagagttgataatatgaccaaactcggagacatcttttctacgggaatggaaaac 199  Q
    |||||| |||||||||||||| |||| | |||||||||||||| ||||||  || ||||||||||||||| |||||||||| | |||| ||||||||| |    
T  24200 actccaacctagagtttgtaaggaaaacggtaaatagagattttcaagaggcgaaaatatgaccaaactcagagacatcttctttacgagaatggaaagc 24101  T
Q  200 atcacgggtaattttataatcaatctcaa 228  Q
    |||||||||||||||| ||||||| ||||    
T  24100 atcacgggtaattttagaatcaatttcaa 24072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 43870500 - 43870267
Alignment:
Q  1 tcaatacaagaaggga-acgaaaataagtaacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaa 99  Q
    ||||||||||| | || |||||||| |||||||  ||||||||||| ||||||||||||| ||||||||||||||||  ||||||||||||   | ||||    
T  43870500 tcaatacaagatgagatacgaaaatgagtaacgagactagctagaa-tgttgcctctcctacaagcgcatgagcggctgcatttgcttgtcctctcgaaa 43870402  T
Q  100 actccaccctagagtttgtaaagaaagcagtaaatagagatttgcaagagttgataatatgaccaaactcggagacatcttttctacgggaatggaaaac 199  Q
    |||||||||||||||||||||||||||| | ||||| |||||||||| || |||||| ||||||||||||| ||||||||| || || |||||||||| |    
T  43870401 actccaccctagagtttgtaaagaaagcggaaaataaagatttgcaa-aggtgataacatgaccaaactcgaagacatcttctcgactggaatggaaagc 43870303  T
Q  200 atca-cgggtaattttataatcaatctcaaaatcaa 234  Q
    |||| |||||||||||| ||||||||||||||||||    
T  43870302 atcaccgggtaattttaaaatcaatctcaaaatcaa 43870267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 43864819 - 43864588
Alignment:
Q  1 tcaatacaagaaggga-acgaaaataagtaacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaa 99  Q
    ||||||||||| | || ||||||||||||||||| | ||| ||||||||||| |||| |||||||||||||||||||  ||||||||| ||   | ||||    
T  43864819 tcaatacaagatgagatacgaaaataagtaacgggattagttagaaatgttgtctcttctgcaagcgcatgagcggctgcatttgcttatcatctggaaa 43864720  T
Q  100 actccaccctagagtttgtaaagaaagcagtaaatagagatttgcaagagttgataatatgaccaaactcggagacatcttttctacgggaatggaaaac 199  Q
    ||| || ||||||||||||||||||||| ||||| |||||||||||| || |||||   |||||||||||||||||||||| || |||| |||| ||| |    
T  43864719 acttcatcctagagtttgtaaagaaagcggtaaacagagatttgcaaaaggtgatagcctgaccaaactcggagacatcttctcgacggaaatgaaaagc 43864620  T
Q  200 atcacgggtaattttataatcaatctcaaaat 231  Q
    ||||| |||||||||| ||||||| |||||||    
T  43864619 atcacaggtaattttagaatcaatttcaaaat 43864588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 11818487 - 11818607
Alignment:
Q  19 gaaaataagtaacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaactccaccctagagtttgt 118  Q
    |||||||| |||||| ||||||||| || || || |||||||||||  |||||||  || | |||||||||||| ||  |||||||||||||||||| ||    
T  11818487 gaaaataaataacgggactagctagtaacgtggcttctcctgcaagaacatgagcaacctcgtttgcttgtcgcctaacaaactccaccctagagttggt 11818586  T
Q  119 aaagaaagcagtaaatagaga 139  Q
    |||||||| | |||| |||||    
T  11818587 aaagaaagaactaaacagaga 11818607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 40473189 - 40473041
Alignment:
Q  1 tcaatacaagaaggga-acgaaaataagtaacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaa 99  Q
    ||||||||||||| || | || ||||| | |||| ||||||||||||||| ||||||| ||||||||||||||| ||  |||||||||||| | |||  |    
T  40473189 tcaatacaagaagtgatatgataataaatgacgggactagctagaaatgtagcctctcttgcaagcgcatgagctgctgcatttgcttgtcacctagtga 40473090  T
Q  100 actccaccctagagtttgtaaagaaagcagtaaatagagatttgcaaga 148  Q
    |||| |||||||||||  | |||||||| | ||| |||| ||| |||||    
T  40473089 actctaccctagagttgatgaagaaagcggaaaagagagctttacaaga 40473041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 32076970 - 32077062
Alignment:
Q  1 tcaatacaagaaggga-acgaaaataagtaacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgc 92  Q
    |||||||||||||||| | || ||||| | || | ||||||||||||||| | ||||| ||||||||||||||| ||  ||||||||||||||    
T  32076970 tcaatacaagaagggatatgataataaatgaccggactagctagaaatgtaggctctcttgcaagcgcatgagctgctgcatttgcttgtcgc 32077062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 29694491 - 29694564
Alignment:
Q  1 tcaatacaagaaggga-acgaaaataagtaacggaactagctagaaatgttgcctctcctgcaagcgcatgagc 73  Q
    ||||| |||||||||| | || ||||| | |||| ||||||||||||||| ||||||| |||||||||||||||    
T  29694491 tcaatgcaagaagggatatgataataaatgacgggactagctagaaatgtagcctctcttgcaagcgcatgagc 29694564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 232
Target Start/End: Complemental strand, 31805502 - 31805401
Alignment:
Q  130 taaatagagatttgcaagagttgataatatgaccaaactcggagacatcttttctacgggaatggaaaacatcacgggtaattttataatcaatctcaaa 229  Q
    ||||||||||||||||||||  |||||||||||||||||| ||||||||||| ||||| ||||||||| |||| ||| |||||||| |||||||||||||    
T  31805502 taaatagagatttgcaagaggcgataatatgaccaaactcagagacatctttcctacgagaatggaaagcatc-cggctaattttaaaatcaatctcaaa 31805404  T
Q  230 atc 232  Q
    |||    
T  31805403 atc 31805401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 48100785 - 48100891
Alignment:
Q  20 aaaataagtaacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaactccaccctagagtttgta 119  Q
    |||||||  ||||| |||| ||||||| || |  |||||||||||| |||||||  ||||||||||||||||| ||| |||||||||||||||||| |||    
T  48100785 aaaataaacaacgggactaactagaaacgtggattctcctgcaagcacatgagcaaccacatttgcttgtcgcctagcaaactccaccctagagttggta 48100884  T
Q  120 aagaaag 126  Q
    || ||||    
T  48100885 aaaaaag 48100891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 29738904 - 29738790
Alignment:
Q  2 caatacaagaaggga-acgaaaataagtaacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaa 100  Q
    ||||||||||||||| | || ||||| | |||| ||||||||||||||| ||||||| | ||||||||| |||  | ||||||||| ||||| |||  ||    
T  29738904 caatacaagaagggatatgataataaatgacgggactagctagaaatgtagcctctcttacaagcgcataagctactacatttgctagtcgcctagtgaa 29738805  T
Q  101 ctccaccctagagtt 115  Q
    ||| |||||||||||    
T  29738804 ctctaccctagagtt 29738790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 121
Target Start/End: Complemental strand, 27810548 - 27810469
Alignment:
Q  42 agaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaactccaccctagagtttgtaaa 121  Q
    ||||| || ||||| ||| |||||| |||||  |||||||||||||||| | ||| ||| |||||||||||||| |||||    
T  27810548 agaaacgtggcctcccctacaagcgtatgagtagccacatttgcttgtctcatagcaaattccaccctagagttggtaaa 27810469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 33611139 - 33611184
Alignment:
Q  81 tttgcttgtcgcttagaaaactccaccctagagtttgtaaagaaag 126  Q
    |||||||||||| ||  |||||||||||||||||| ||||||||||    
T  33611139 tttgcttgtcgcctaacaaactccaccctagagttggtaaagaaag 33611184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 4614976 - 4614879
Alignment:
Q  29 aacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaactccaccctagagtttgtaaagaaag 126  Q
    ||||||||||| |||||| || || ||| |||||||| |||||||  ||||||||| ||||||| ||| |||||||||||||||||| ||||| ||||    
T  4614976 aacggaactagttagaaacgtggcttcttctgcaagcacatgagcaaccacatttgtttgtcgcctagcaaactccaccctagagttggtaaaaaaag 4614879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 13288182 - 13288081
Alignment:
Q  20 aaaataagtaacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaactccaccctagagtttgta 119  Q
    |||||||  ||||| ||||||||||||| | || |||||||||||| |||||||  || |||||| ||||||| ||| |||||||||||||||||| |||    
T  13288182 aaaataaacaacgggactagctagaaatatggcttctcctgcaagcacatgagcaaccgcatttgtttgtcgcctagcaaactccaccctagagttggta 13288083  T
Q  120 aa 121  Q
    ||    
T  13288082 aa 13288081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 44312839 - 44312931
Alignment:
Q  1 tcaatacaagaaggga-acgaaaataagtaacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgc 92  Q
    |||||||||||||||| | || ||||| | |||| ||||||||||||||| || |||| ||||||||||||||| ||  ||||||||||||||    
T  44312839 tcaatacaagaagggatatgataataaatgacgggactagctagaaatgtagcttctcttgcaagcgcatgagctgctgcatttgcttgtcgc 44312931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 24065309 - 24065189
Alignment:
Q  19 gaaaataagtaacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaactccaccctagagtttgt 118  Q
    ||||||||  ||||| ||||||||| || || || |||||||||||  |||||||  || | |||||||||||| ||  ||||||||||||| |||| ||    
T  24065309 gaaaataaacaacgggactagctagtaacgtggcttctcctgcaagaacatgagcaacctcgtttgcttgtcgcctaacaaactccaccctaaagttggt 24065210  T
Q  119 aaagaaagcagtaaatagaga 139  Q
    |||||||| | |||| |||||    
T  24065209 aaagaaagaactaaacagaga 24065189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 42474496 - 42474548
Alignment:
Q  35 actagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgctt 87  Q
    |||| |||||||||| | ||||||||||||||||||||| || ||||||||||    
T  42474496 actatctagaaatgtagtctctcctgcaagcgcatgagcagctacatttgctt 42474548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 133
Target Start/End: Complemental strand, 41117269 - 41117171
Alignment:
Q  35 actagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaactccaccctagagtttgtaaagaaagcagtaaa 133  Q
    ||||||||| || || || |||| |||||| ||||||||  || |||| ||||||||| ||  ||||||||||| |||||| | ||| |||||||||||    
T  41117269 actagctagtaacgtggcttctcttgcaagagcatgagcaacctcattggcttgtcgcctaacaaactccacccgagagttggaaaataaagcagtaaa 41117171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 23508904 - 23509014
Alignment:
Q  29 aacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaactccaccctagagtttgtaaagaaagca 128  Q
    ||||| ||||||| | ||||| || |||||||||||  |||||||  || |||||||||||||| ||  ||||||||||||||| || |||||||||| |    
T  23508904 aacgggactagctcgtaatgtggcttctcctgcaagaacatgagcaaccccatttgcttgtcgcctaacaaactccaccctagaattggtaaagaaagaa 23509003  T
Q  129 gtaaatagaga 139  Q
     ||||||||||    
T  23509004 ctaaatagaga 23509014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 204
Target Start/End: Complemental strand, 16323507 - 16323338
Alignment:
Q  35 actagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaactccaccctagagtttgtaaagaaagcagtaaat 134  Q
    ||||||||||||| |  |||||||| | ||  ||||||||||  |||||||||||||  |||  ||||| | ||| || |||||||||||||| | |||     
T  16323507 actagctagaaatatatcctctcctactagaacatgagcggctgcatttgcttgtcggctagtgaactctatcctggaatttgtaaagaaagcggaaaag 16323408  T
Q  135 agagatttgcaagagttgataatatgaccaaactcggagacatcttttctacgggaatggaaaacatcac 204  Q
    |||| |||||||||   ||||| ||| ||||||||||| | ||| | |||||| ||| ||||| ||||||    
T  16323407 agagctttgcaagatgcgataacatgcccaaactcggaaatatcatctctacgagaaaggaaagcatcac 16323338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 204
Target Start/End: Complemental strand, 16335655 - 16335486
Alignment:
Q  35 actagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaactccaccctagagtttgtaaagaaagcagtaaat 134  Q
    ||||||||||||| |  |||||||| | ||  ||||||||||  |||||||||||||  |||  ||||| | ||| || |||||||||||||| | |||     
T  16335655 actagctagaaatatatcctctcctactagaacatgagcggctgcatttgcttgtcggctagtgaactctatcctggaatttgtaaagaaagcggaaaag 16335556  T
Q  135 agagatttgcaagagttgataatatgaccaaactcggagacatcttttctacgggaatggaaaacatcac 204  Q
    |||| |||||||||   ||||| ||| ||||||||||| | ||| | |||||| ||| ||||| ||||||    
T  16335555 agagctttgcaagatgcgataacatgcccaaactcggaaatatcatctctacgagaaaggaaagcatcac 16335486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 34433664 - 34433549
Alignment:
Q  1 tcaatacaagaaggga-acgaaaataagtaacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaa 99  Q
    |||||||||||||||| | || ||||| | |||| ||||| ||||||||| ||||||| || |||||||||||| ||  ||||||||||| || |||  |    
T  34433664 tcaatacaagaagggatatgataataaatgacgggactagttagaaatgtagcctctcttgtaagcgcatgagctgctgcatttgcttgttgcatagtga 34433565  T
Q  100 actccaccctagagtt 115  Q
    |||| ||||| |||||    
T  34433564 actctaccctggagtt 34433549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 21699303 - 21699353
Alignment:
Q  68 atgagcggccacatttgcttgtcgcttagaaaactccaccctagagtttgt 118  Q
    |||||| |||||||||||| |||||  || |||||||||||||||||||||    
T  21699303 atgagcagccacatttgctcgtcgccgagtaaactccaccctagagtttgt 21699353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 16436574 - 16436430
Alignment:
Q  22 aataagtaacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaactccaccctagagtttgtaaa 121  Q
    ||||| ||| || |||| ||||||||||  | ||||||||||| ||||||||  |  ||||||||||||||     |||||| |||| ||||||||| ||    
T  16436574 aataaataatgggactaactagaaatgtcacatctcctgcaagggcatgagcaactgcatttgcttgtcgccggataaactctacccaagagtttgtgaa 16436475  T
Q  122 gaaagcagtaaatagagatttgcaagagttgataatatgaccaaa 166  Q
    ||| ||   |||||||| |||||||||  ||||||| | ||||||    
T  16436474 gaaggccaaaaatagagctttgcaagatgtgataatgttaccaaa 16436430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 28793285 - 28793052
Alignment:
Q  1 tcaatacaagaaggga-acgaaaataagtaacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaa 99  Q
    ||||||||||| |||| |||||||| | |||||| ||||| ||||||||| | ||||| |||||||||||||||  |   ||||| ||||||  |||  |    
T  28793285 tcaatacaagatgggatacgaaaattaataacgggactagttagaaatgtagtctctcatgcaagcgcatgagcaactgaatttgtttgtcgtctagtga 28793186  T
Q  100 actccaccctagagtttgtaaagaaagcagtaaatagagatttgcaagagttgataatatgaccaaactcggagacatcttttctacgggaatggaaaac 199  Q
    ||||||||||| |||||||||||||||  | ||| |||| |||  |||| || ||||| || ||| |||| || | ||| | || ||  ||||||||| |    
T  28793185 actccacccta-agtttgtaaagaaagaggaaaaaagagctttaaaagatttaataatgtgtccatactcagaaatatcatctcgacatgaatggaaagc 28793087  T
Q  200 atcacgggtaattttataatcaatctcaaaatcaa 234  Q
    |||||| |||||||||  ||||| || ||||||||    
T  28793086 atcacgagtaattttaggatcaagctaaaaatcaa 28793052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 13907622 - 13907714
Alignment:
Q  1 tcaatacaagaaggga-acgaaaataagtaacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgc 92  Q
    |||||||||||||||| | || ||||| | |||| ||||||||||||||| ||||||| ||||| ||||||||| ||  ||||||||||||||    
T  13907622 tcaatacaagaagggatatgataataaatgacgggactagctagaaatgtagcctctcttgcaaacgcatgagctgctgcatttgcttgtcgc 13907714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 19237729 - 19237655
Alignment:
Q  52 cctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaactccaccctagagtttgtaaagaaag 126  Q
    |||||| ||||||  |||||||  || |||||||||||||| ||  |||||||||||||||||| ||||||||||    
T  19237729 cctctcttgcaagaacatgagcaacctcatttgcttgtcgcctaataaactccaccctagagttggtaaagaaag 19237655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 6783352 - 6783307
Alignment:
Q  76 ccacatttgcttgtcgcttagaaaactccaccctagagtttgtaaa 121  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||||    
T  6783352 ccacatttgcttgtcgcctattaaactccaccctagagtttgtaaa 6783307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 40299998 - 40299902
Alignment:
Q  19 gaaaataagtaacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaactccaccctagagtt 115  Q
    ||||||||  |||||||||||| |||||||| |||||| || | || | ||||||  |||| |||||||||||| ||  ||||||||||| ||||||    
T  40299998 gaaaataaacaacggaactagcgagaaatgtggcctcttctacgagagtatgagcaaccacgtttgcttgtcgcctaacaaactccacccgagagtt 40299902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 234
Target Start/End: Original strand, 5615502 - 5615605
Alignment:
Q  131 aaatagagatttgcaagagttgataatatgaccaaactcggagacatcttttctacgggaatggaaaacatcacgggtaattttataatcaatctcaaaa 230  Q
    |||||||| |||||||||  |||| | ||| ||||||||||| || || | || ||||||||||||| |||| |  |||| |||| |||||| |||||||    
T  5615502 aaatagagctttgcaagatgtgatgacatgcccaaactcggaaacttcatctcaacgggaatggaaagcatcgcatgtaactttagaatcaagctcaaaa 5615601  T
Q  231 tcaa 234  Q
    ||||    
T  5615602 tcaa 5615605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 22786130 - 22786184
Alignment:
Q  67 catgagcggccacatttgcttgtcgcttagaaaactccaccctagagtttgtaaa 121  Q
    ||||||| |||||||| ||||||||| |||  ||||||||||| |||||||||||    
T  22786130 catgagccgccacattcgcttgtcgcctagcgaactccaccctggagtttgtaaa 22786184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 26683573 - 26683477
Alignment:
Q  19 gaaaataagtaacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaactccaccctagagtt 115  Q
    |||||||| || ||| |||||| |||||||| ||||| |||||||| | ||||||  |||||||  ||||||||  |  ||||||||||| ||||||    
T  26683573 gaaaataaatagcgggactagcaagaaatgtggcctcccctgcaagagtatgagccaccacattaacttgtcgcggaacaaactccacccgagagtt 26683477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 28417673 - 28417581
Alignment:
Q  1 tcaatacaagaaggga-acgaaaataagtaacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgc 92  Q
    |||||| ||||||||| | || ||||| | |||| ||||||||||||||| ||||||| ||||||||||||||| ||  ||||||||||||||    
T  28417673 tcaatataagaagggatatgataataaatgacgggactagctagaaatgtagcctctcttgcaagcgcatgagctgctgcatttgcttgtcgc 28417581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 33213716 - 33213624
Alignment:
Q  1 tcaatacaagaaggga-acgaaaataagtaacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgc 92  Q
    |||||||||||||||| | || ||||| | |||| ||||||||||||||| | ||||| |||||||  |||||| ||  ||||||||||||||    
T  33213716 tcaatacaagaagggatatgataataaatgacgggactagctagaaatgtagtctctcttgcaagcaaatgagctgctgcatttgcttgtcgc 33213624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 37590093 - 37590187
Alignment:
Q  31 cggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaactccaccctagagtttgtaaagaaa 125  Q
    |||||||||||| | | || ||||| | |||||| ||||||||  |||| || ||||||||| ||  |||||||||||||||||| | |||||||    
T  37590093 cggaactagctaaagacgtggcctcccttgcaagagcatgagcaaccacgttggcttgtcgcctaacaaactccaccctagagttagaaaagaaa 37590187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 2246800 - 2246885
Alignment:
Q  54 tctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaactccaccctagagtttgtaaagaaagcagtaaatagaga 139  Q
    |||||||||||  |||||||  || | ||||||||| || ||  |||||||||||||||||| |||||||||| | |||| |||||    
T  2246800 tctcctgcaagaacatgagcaacctcgtttgcttgttgcctaacaaactccaccctagagttggtaaagaaagaattaaacagaga 2246885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 42080540 - 42080464
Alignment:
Q  39 gctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaactccaccctagagtt 115  Q
    |||| |||||| | |||||||||||| | ||||||   |||||||||||||| | ||| ||||||||||| ||||||    
T  42080540 gctacaaatgtggtctctcctgcaagagtatgagcaatcacatttgcttgtctcctagcaaactccacccgagagtt 42080464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 73392 - 73478
Alignment:
Q  29 aacggaactagctagaaatgttgcctctcctgcaagcgcatgagcggccacatttgcttgtcgcttagaaaactccaccctagagtt 115  Q
    ||||| |||||||||||| || | ||||||||| || | || |||  ||||||||||||||| ||||| ||||||||||| ||||||    
T  73392 aacgggactagctagaaacgtggtctctcctgcgagtgtatcagcaaccacatttgcttgtctcttagcaaactccacccgagagtt 73478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University