View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18078_high_6 (Length: 548)

Name: NF18078_high_6
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18078_high_6
NF18078_high_6
[»] chr8 (2 HSPs)
chr8 (113-529)||(3239359-3239776)
chr8 (158-529)||(3243969-3244336)


Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 113 - 529
Target Start/End: Complemental strand, 3239776 - 3239359
Alignment:
Q  113 gcataacaatagaattcaacacatacatgcataaatattttaatacacatagtaagataacaaaatagtgcatgttcatgcaatagaaaaataacaaaag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3239776 gcataacaatagaattcaacacatacatgcataaatattttaatacacatagtaagataacaaaatagtgcatgttcatgcaatagaaaaataacaaaag 3239677  T
Q  213 tctagggtgctccatatcctagtttagcatccaaatccctctccacaaatcctttttctgcttcaatcaactcttttcttgctgttgcaagatccctctc 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3239676 tctagggtgctccatatcctagtttagcatccaaatccctctccacgaatcctttttctgcttcaatcaactcttttcttgctgttgcaagatccctctc 3239577  T
Q  313 tataagttctacattcttcctcagctttttcacatttgcttctctctggacataatttttcgtcctcatcgcagataaataagaaggc-ttcaaccagga 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3239576 tataagttctacattcttcctcagctttttcacatttgcttctctctggacataatttttcgtcctcatcgcagataaataagaaggctttcaaccagga 3239477  T
Q  412 taaatcaaaaccaactgtctcaagttcttcccataaaatttggagacagttacaagcatcttcattcatatctttcacctttttagtgtttagaaaatat 511  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3239476 taaatcaaaaccaactgtctcaagttcttcccattaaatttggagacagttacaagcatcttcattcatatctttcacctttttagtgtttagaaaatat 3239377  T
Q  512 agaactcggcctaatgct 529  Q
    ||||||||||||||||||    
T  3239376 agaactcggcctaatgct 3239359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 158 - 529
Target Start/End: Complemental strand, 3244336 - 3243969
Alignment:
Q  158 cacatagtaagataacaaaata--gtgcatgttcatgcaatagaaaaataacaaaagtctagggtgctccatatcctagtttagcatccaaatccctctc 255  Q
    |||||||||||||||||||| |  ||||||||||||||||      ||||||| ||||||| | ||||||||| ||||||||||||||||||||||||||    
T  3244336 cacatagtaagataacaaaaaaaagtgcatgttcatgcaa------aataacataagtctaagctgctccatagcctagtttagcatccaaatccctctc 3244243  T
Q  256 cacaaatcctttttctgcttcaatcaactcttttcttgctgttgcaagatccctctctataagttctacattcttcctcagctttttcacatttgcttct 355  Q
     |||||| |||||||||||||||||||||||| ||||||| | ||| |||| ||||||| |   |||| | ||||||||||| | |||||| |||| | |    
T  3244242 tacaaattctttttctgcttcaatcaactcttctcttgctttagcatgatcactctctagagcctctatagtcttcctcagcctattcacacttgcatat 3244143  T
Q  356 ctctggacataatttttcgtcctcatcgcagataaataagaaggcttcaaccaggataaatcaaaaccaactgtctcaagttcttcccataaaatttgga 455  Q
    |||||  ||||| ||||| |    || ||||||  | || | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3244142 ctctgagcataacttttcttatcaattgcagattcaaaatatggcttcaaccaggataaatcaaaacctactgtctcaagttcttcccataaaatttgga 3244043  T
Q  456 gacagttacaagcatcttcattcatatctttcacctttttagtgtttagaaaatatagaactcggcctaatgct 529  Q
    ||   |||||||| ||||||||||||||||||||| |||| ||||||||||||| ||||||||| |||||||||    
T  3244042 gatgattacaagcttcttcattcatatctttcacccttttggtgtttagaaaatgtagaactcgacctaatgct 3243969  T

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