View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_high_62 (Length: 240)
Name: NF18078_high_62
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_high_62 |
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Alignment Details
Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 335483 - 335613
Alignment:
| Q |
1 |
tttattcgaaatagtgataaatcaacaaaatggtgggccgnnnnnnnngtaatatcagctttttgccagacagtaaaaagggttttggtttaggtatgaa |
100 |
Q |
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| T |
335483 |
tttattcgaaatagtgataaatcaacaaaatggtgggccgttttttttgtaatatcagctttttgccagacagtaaaataggttttggtttaggtatgaa |
335582 |
T |
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| Q |
101 |
gtgagtttagattgtcttttagaaacctgtg |
131 |
Q |
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| T |
335583 |
gtgagtttagattgtcttttagaaacctgtg |
335613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 335660 - 335712
Alignment:
| Q |
154 |
gccatttggttcatggatagaagatttgagcattgcatcacatatttggacat |
206 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
335660 |
gccacttggttcatggatagaagatttgagcattgcatcacatatttggacat |
335712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 42306874 - 42306793
Alignment:
| Q |
140 |
atcttgtaaattcggccatttggttcatggatagaagatttgagcattgcatcacatatttggacatgtaagattgtatttg |
221 |
Q |
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| T |
42306874 |
atcttgtatattcggccatttggttcatggatagaagatttgagcattgcatcacatatttggacatgtaagattgtatttg |
42306793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 42307030 - 42306959
Alignment:
| Q |
60 |
tttttgccagacagtaaaaagggttttggtttaggtatgaagtgagtttagattgtcttttagaaacctgtg |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42307030 |
tttttgccagacagtaaaaagggttttggtttaggtatgaagcgagtttagattgtcttttagaaacctgtg |
42306959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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