View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_high_67 (Length: 223)
Name: NF18078_high_67
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_high_67 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 43338091 - 43337880
Alignment:
| Q |
1 |
atttacagttttatattatacattggtaaataagtatacataattttatgcatgttatatnnnnnnn-ttgaaaatgcttacatataaatttagaaaggg |
99 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43338091 |
atttacagttttatattatacactgataaataagtatacataattttatgcatgttatataaaaaaaattgaaaatgcttacatataaatttagaaaggg |
43337992 |
T |
|
| Q |
100 |
ttgagttatgttagtttgagatggatactggttctccgagatcacattgccatgttgccatctga-ttaagaaaacactcacatatcagaacaaattcat |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43337991 |
ttgagttatgttagtttgagatggatactggttctccgagatcacattgccatgttgccatctgatttaagaaaacactcacatatcagaacaaattcat |
43337892 |
T |
|
| Q |
199 |
acataatcatga |
210 |
Q |
| |
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|||||||||||| |
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| T |
43337891 |
acataatcatga |
43337880 |
T |
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