View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18078_low_1 (Length: 746)

Name: NF18078_low_1
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18078_low_1
NF18078_low_1
[»] chr7 (6 HSPs)
chr7 (192-740)||(30846945-30847485)
chr7 (16-80)||(30847601-30847665)
chr7 (16-57)||(30841233-30841274)
chr7 (543-592)||(43324634-43324683)
chr7 (351-392)||(30841134-30841175)
chr7 (93-122)||(30847555-30847584)
[»] chr6 (2 HSPs)
chr6 (543-593)||(31956127-31956177)
chr6 (545-609)||(3294819-3294884)
[»] chr3 (8 HSPs)
chr3 (543-609)||(44651931-44651997)
chr3 (548-611)||(49443377-49443440)
chr3 (548-609)||(5173964-5174025)
chr3 (548-609)||(48515339-48515400)
chr3 (543-609)||(19879256-19879323)
chr3 (546-609)||(24303445-24303508)
chr3 (547-609)||(28951771-28951833)
chr3 (552-609)||(23653174-23653231)
[»] chr8 (8 HSPs)
chr8 (543-609)||(21548445-21548512)
chr8 (552-609)||(26192674-26192731)
chr8 (543-609)||(17072511-17072578)
chr8 (543-609)||(17575693-17575760)
chr8 (543-593)||(2908040-2908090)
chr8 (543-609)||(31712604-31712670)
chr8 (543-608)||(38620289-38620355)
chr8 (548-609)||(38283179-38283240)
[»] chr2 (7 HSPs)
chr2 (543-609)||(3446785-3446851)
chr2 (543-611)||(28194685-28194754)
chr2 (548-615)||(15939338-15939406)
chr2 (543-609)||(4183231-4183298)
chr2 (543-609)||(4878264-4878330)
chr2 (548-610)||(31411806-31411868)
chr2 (553-605)||(8257006-8257059)
[»] scaffold0246 (1 HSPs)
scaffold0246 (548-609)||(24435-24496)
[»] chr4 (6 HSPs)
chr4 (546-611)||(12625882-12625947)
chr4 (548-609)||(40486496-40486557)
chr4 (546-609)||(51890852-51890915)
chr4 (548-609)||(2629634-2629695)
chr4 (548-609)||(11294792-11294853)
chr4 (548-609)||(49264581-49264642)
[»] chr5 (2 HSPs)
chr5 (545-593)||(27241712-27241760)
chr5 (548-609)||(14804936-14804997)
[»] chr1 (4 HSPs)
chr1 (546-609)||(31124590-31124653)
chr1 (566-615)||(41460624-41460674)
chr1 (543-611)||(4482546-4482615)
chr1 (566-611)||(36313951-36313996)
[»] scaffold0608 (1 HSPs)
scaffold0608 (543-611)||(9019-9088)
[»] scaffold0010 (1 HSPs)
scaffold0010 (548-609)||(236311-236372)


Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 192 - 740
Target Start/End: Complemental strand, 30847485 - 30846945
Alignment:
Q  192 agccatgctatcaccctaagtttgatcgaaatcttcgatttgttgcttagaaaaatgtttgnnnnnnnnnctgtcaaccctccgattttcnnnnnnngag 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||           |||||||| ||||||| ||       |||    
T  30847485 agccatgctatcaccctaagtttgatcgaaatcttcgatttgttgcttagaaaaatggtttttttttt---tgtcaaccttccgattctcgaaaaaagag 30847389  T
Q  292 tgccataatacattgtagtagttcaatcaagatgcacgtataaagtctaattaaaaaccgtttaaagtgtatacatatgtgaaaaataacgcaactcaca 391  Q
    || ||||||| || |||||   ||||||||||||||||||  |||||| | ||| |||||||||||||||||| | || |||||||||||||||||||||    
T  30847388 tgtcataatatatcgtagt---tcaatcaagatgcacgta--aagtctgactaagaaccgtttaaagtgtatagagatatgaaaaataacgcaactcaca 30847294  T
Q  392 agttgtatacgtcacaaccaaaagtgaacttagcatttgaaaaatggctactcccaaattaacttggtctacattctacatagtaatttaaattttaaaa 491  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||| ||||||||||    
T  30847293 agttgtatatgtcacaatcaaaagtgaacttagcatttgaaaaatggctactcccaaattaacttggtctgcattctacataccaatttgaattttaaaa 30847194  T
Q  492 attaacacgtagaagtatttgatttggttgcatttaaaaacaattttaagatcaaatagcctagtggctatagttcacacattttaatgtgaagaagtgg 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||| | ||||||    
T  30847193 attaacacgtagaagtatttgatttggttgcatttaaaaacaattttaaaatcaaatagtctagtggctagagttcacacattttaatgtggaaaagtgg 30847094  T
Q  592 ggaattcggggttcgaactctaactcctatgcaatatttctaccaacggagttaaactcacgggatatatttcacaagtcattttattagtgggagtgaa 691  Q
    |||||||| |||||||| |||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| |||    
T  30847093 ggaattcgaggttcgaaatctaactcctatgcaatattcctaccaacggagtaaaaatcacgggatatatttcacaagtcattttattggtgggagcgaa 30846994  T
Q  692 taaagatttttaaaaccaaattgaggataaattctctatatattcttcg 740  Q
     |||||||||||||||||| ||||||||||||||||||||| |||||||    
T  30846993 caaagatttttaaaaccaagttgaggataaattctctatattttcttcg 30846945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 30847665 - 30847601
Alignment:
Q  16 caatacattttatgagatggaaaaagaggtatataaattagactcctttcacatgcacacacaat 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30847665 caatacattttatgagatggaaaaagaggtatataaattagactcctttcacatgcacacacaat 30847601  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 30841274 - 30841233
Alignment:
Q  16 caatacattttatgagatggaaaaagaggtatataaattaga 57  Q
    |||||||||||||||| |||||||||||||||| ||||||||    
T  30841274 caatacattttatgagttggaaaaagaggtataaaaattaga 30841233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 43324683 - 43324634
Alignment:
Q  543 tcaaatagcctagtggctatagttcacacattttaatgtgaagaagtggg 592  Q
    |||| ||| |||||||||| || |||||||||||||||||||||||||||    
T  43324683 tcaagtagtctagtggctagagctcacacattttaatgtgaagaagtggg 43324634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 351 - 392
Target Start/End: Complemental strand, 30841175 - 30841134
Alignment:
Q  351 gtttaaagtgtatacatatgtgaaaaataacgcaactcacaa 392  Q
    |||||||||||||| | ||| |||||||||||||||||||||    
T  30841175 gtttaaagtgtatagagatgcgaaaaataacgcaactcacaa 30841134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 122
Target Start/End: Complemental strand, 30847584 - 30847555
Alignment:
Q  93 ggtggtgcacacacaaatctaacgtctctc 122  Q
    ||||||||||||||||||||||||||||||    
T  30847584 ggtggtgcacacacaaatctaacgtctctc 30847555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 543 - 593
Target Start/End: Original strand, 31956127 - 31956177
Alignment:
Q  543 tcaaatagcctagtggctatagttcacacattttaatgtgaagaagtgggg 593  Q
    ||||||||||||||||||| || |||||||| |||||||||||||||||||    
T  31956127 tcaaatagcctagtggctagagctcacacatattaatgtgaagaagtgggg 31956177  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 545 - 609
Target Start/End: Complemental strand, 3294884 - 3294819
Alignment:
Q  545 aaatagcctagtggctatagttcacacattttaat-gtgaagaagtggggaattcggggttcgaac 609  Q
    ||||||||||||||||| |  ||||||| |||||| ||||||||||||||  | ||||||||||||    
T  3294884 aaatagcctagtggctagaactcacacaatttaattgtgaagaagtggggtgtccggggttcgaac 3294819  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 543 - 609
Target Start/End: Original strand, 44651931 - 44651997
Alignment:
Q  543 tcaaatagcctagtggctatagttcacacattttaatgtgaagaagtggggaattcggggttcgaac 609  Q
    |||| |||||||||||||| ||||||||||| | |||||| |||||||||| || ||||||||||||    
T  44651931 tcaagtagcctagtggctagagttcacacatataaatgtggagaagtggggtatccggggttcgaac 44651997  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 548 - 611
Target Start/End: Original strand, 49443377 - 49443440
Alignment:
Q  548 tagcctagtggctatagttcacacattttaatgtgaagaagtggggaattcggggttcgaactc 611  Q
    |||||||||||||| || |||||||||| |||||| ||||||||||  | ||||||||||||||    
T  49443377 tagcctagtggctagagctcacacatttaaatgtggagaagtggggtgtccggggttcgaactc 49443440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 609
Target Start/End: Original strand, 5173964 - 5174025
Alignment:
Q  548 tagcctagtggctatagttcacacattttaatgtgaagaagtggggaattcggggttcgaac 609  Q
    |||||||||||||| || ||||||| || |||||| ||||||||||  ||||||||||||||    
T  5173964 tagcctagtggctagagctcacacaattaaatgtggagaagtggggtgttcggggttcgaac 5174025  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 609
Target Start/End: Original strand, 48515339 - 48515400
Alignment:
Q  548 tagcctagtggctatagttcacacattttaatgtgaagaagtggggaattcggggttcgaac 609  Q
    |||||||||||||| ||||||||||||| |||||| ||||||| ||  | ||||||||||||    
T  48515339 tagcctagtggctagagttcacacatttaaatgtggagaagtgtggtgtccggggttcgaac 48515400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 609
Target Start/End: Complemental strand, 19879323 - 19879256
Alignment:
Q  543 tcaaatagcctagtggctatagttcacacattttaat-gtgaagaagtggggaattcggggttcgaac 609  Q
    |||| |||| ||||||||| || ||||||| |||||| ||||||||||||||  ||||||||||||||    
T  19879323 tcaagtagcatagtggctagagctcacacaatttaattgtgaagaagtggggtgttcggggttcgaac 19879256  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 609
Target Start/End: Complemental strand, 24303508 - 24303445
Alignment:
Q  546 aatagcctagtggctatagttcacacattttaatgtgaagaagtggggaattcggggttcgaac 609  Q
    |||||||||||||||| || ||||||| || |||||| ||||||||||  | ||||||||||||    
T  24303508 aatagcctagtggctagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaac 24303445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 547 - 609
Target Start/End: Complemental strand, 28951833 - 28951771
Alignment:
Q  547 atagcctagtggctatagttcacacattttaatgtgaagaagtggggaattcggggttcgaac 609  Q
    ||||||||||||||| || |||||||||| |||||||||| ||||||  |  |||||||||||    
T  28951833 atagcctagtggctagagctcacacatttaaatgtgaagatgtggggtgtctggggttcgaac 28951771  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 609
Target Start/End: Original strand, 23653174 - 23653231
Alignment:
Q  552 ctagtggctatagttcacacattttaatgtgaagaagtggggaattcggggttcgaac 609  Q
    |||||||||| || ||||||||||||||||| | ||||| ||  ||||||||||||||    
T  23653174 ctagtggctagagctcacacattttaatgtggataagtgaggtgttcggggttcgaac 23653231  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 543 - 609
Target Start/End: Original strand, 21548445 - 21548512
Alignment:
Q  543 tcaaatagcctagtggctatagttcacacattttaa-tgtgaagaagtggggaattcggggttcgaac 609  Q
    |||| |||||||||||||| || ||||||||||||| |||| ||||||||||  ||||||||||||||    
T  21548445 tcaagtagcctagtggctagagctcacacattttaattgtggagaagtggggtgttcggggttcgaac 21548512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 552 - 609
Target Start/End: Original strand, 26192674 - 26192731
Alignment:
Q  552 ctagtggctatagttcacacattttaatgtgaagaagtggggaattcggggttcgaac 609  Q
    |||||||||| ||||||||||||||||| || ||||||||||  | ||||||||||||    
T  26192674 ctagtggctagagttcacacattttaatatggagaagtggggtgtccggggttcgaac 26192731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 609
Target Start/End: Original strand, 17072511 - 17072578
Alignment:
Q  543 tcaaatagcctagtggctatagttcacacattttaa-tgtgaagaagtggggaattcggggttcgaac 609  Q
    |||| |||||||||||||| || ||||||| ||||| |||| ||||||||||  ||||||||||||||    
T  17072511 tcaagtagcctagtggctagagctcacacaatttaattgtggagaagtggggtgttcggggttcgaac 17072578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 609
Target Start/End: Complemental strand, 17575760 - 17575693
Alignment:
Q  543 tcaaatagcctagtggctatagttcacacattttaa-tgtgaagaagtggggaattcggggttcgaac 609  Q
    |||| |||||||||||||| || ||||||| ||||| |||| ||||||||||  ||||||||||||||    
T  17575760 tcaagtagcctagtggctagagctcacacaatttaattgtggagaagtggggtgttcggggttcgaac 17575693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 543 - 593
Target Start/End: Original strand, 2908040 - 2908090
Alignment:
Q  543 tcaaatagcctagtggctatagttcacacattttaatgtgaagaagtgggg 593  Q
    |||| |||||||||||||| || ||||||||||||||| | ||||||||||    
T  2908040 tcaagtagcctagtggctagagctcacacattttaatgcggagaagtgggg 2908090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 543 - 609
Target Start/End: Complemental strand, 31712670 - 31712604
Alignment:
Q  543 tcaaatagcctagtggctatagttcacacattttaatgtgaagaagtggggaattcggggttcgaac 609  Q
    |||| |||||||||||||| || |||||||| | |||||| ||||||||||  | ||||||||||||    
T  31712670 tcaagtagcctagtggctagagctcacacatataaatgtggagaagtggggtgtccggggttcgaac 31712604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 543 - 608
Target Start/End: Original strand, 38620289 - 38620355
Alignment:
Q  543 tcaaatagcctagtggctatagttcacacattttaa-tgtgaagaagtggggaattcggggttcgaa 608  Q
    |||| |||||||||||||| |||||||||| ||||| |||| |||||||| |  |||||||||||||    
T  38620289 tcaagtagcctagtggctagagttcacacaatttaattgtggagaagtggagtgttcggggttcgaa 38620355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 609
Target Start/End: Complemental strand, 38283240 - 38283179
Alignment:
Q  548 tagcctagtggctatagttcacacattttaatgtgaagaagtggggaattcggggttcgaac 609  Q
    |||||||||||||| |||||||||| || |||||| ||||||||||  |  |||||||||||    
T  38283240 tagcctagtggctagagttcacacaattaaatgtggagaagtggggtgtctggggttcgaac 38283179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 543 - 609
Target Start/End: Complemental strand, 3446851 - 3446785
Alignment:
Q  543 tcaaatagcctagtggctatagttcacacattttaatgtgaagaagtggggaattcggggttcgaac 609  Q
    |||| |||||||||||||| ||||||||||| | |||||| ||||||||||  | ||||||||||||    
T  3446851 tcaagtagcctagtggctagagttcacacatataaatgtggagaagtggggtgtccggggttcgaac 3446785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 611
Target Start/End: Complemental strand, 28194754 - 28194685
Alignment:
Q  543 tcaaatagcctagtggctatagttcacacattttaa-tgtgaagaagtggggaattcggggttcgaactc 611  Q
    ||||||||||||||||||| || ||||||| ||||| |||| ||||||||||  | ||||||||||||||    
T  28194754 tcaaatagcctagtggctagagctcacacaatttaattgtggagaagtggggtgtccggggttcgaactc 28194685  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 615
Target Start/End: Complemental strand, 15939406 - 15939338
Alignment:
Q  548 tagcctagtggctatagttcacacattttaa-tgtgaagaagtggggaattcggggttcgaactctaac 615  Q
    |||||||||||||  || ||||||||||||| |||| ||||||||||  |||||||||||||| |||||    
T  15939406 tagcctagtggctggagctcacacattttaaatgtggagaagtggggtgttcggggttcgaaccctaac 15939338  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 609
Target Start/End: Complemental strand, 4183298 - 4183231
Alignment:
Q  543 tcaaatagcctagtggctatagttcacacattttaa-tgtgaagaagtggggaattcggggttcgaac 609  Q
    |||| |||||||||||||| |||||||||| ||||| |||| |||||||| |  ||||||||||||||    
T  4183298 tcaagtagcctagtggctagagttcacacaatttaattgtggagaagtggagtgttcggggttcgaac 4183231  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 543 - 609
Target Start/End: Complemental strand, 4878330 - 4878264
Alignment:
Q  543 tcaaatagcctagtggctatagttcacacattttaatgtgaagaagtggggaattcggggttcgaac 609  Q
    |||| |||||||||||||| || |||||||| | |||||| ||||||||||  | ||||||||||||    
T  4878330 tcaagtagcctagtggctagagctcacacatataaatgtggagaagtggggtgtccggggttcgaac 4878264  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 548 - 610
Target Start/End: Original strand, 31411806 - 31411868
Alignment:
Q  548 tagcctagtggctatagttcacacattttaatgtgaagaagtggggaattcggggttcgaact 610  Q
    |||| |||||||||||| ||||||| || |||||||| ||||||||  |||||| ||||||||    
T  31411806 tagcttagtggctatagctcacacaattaaatgtgaaaaagtggggtgttcgggattcgaact 31411868  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 605
Target Start/End: Original strand, 8257006 - 8257059
Alignment:
Q  553 tagtggctatagttcacacatttt-aatgtgaagaagtggggaattcggggttc 605  Q
    ||||||||| |||||||||||||| |||||| |||||||| ||||| |||||||    
T  8257006 tagtggctaaagttcacacattttaaatgtggagaagtggagaatttggggttc 8257059  T

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Target: scaffold0246 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 609
Target Start/End: Complemental strand, 24496 - 24435
Alignment:
Q  548 tagcctagtggctatagttcacacattttaatgtgaagaagtggggaattcggggttcgaac 609  Q
    |||||||||||||| || |||||||||| ||||||||||||||| |  | ||||||||||||    
T  24496 tagcctagtggctagagctcacacatttaaatgtgaagaagtggagtgtccggggttcgaac 24435  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 546 - 611
Target Start/End: Complemental strand, 12625947 - 12625882
Alignment:
Q  546 aatagcctagtggctatagttcacacattttaatgtgaagaagtggggaattcggggttcgaactc 611  Q
    |||||||||||||||| |||||||||| || |||||| ||||||||||  | ||| ||||||||||    
T  12625947 aatagcctagtggctagagttcacacaattaaatgtggagaagtggggtgtccggtgttcgaactc 12625882  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 609
Target Start/End: Complemental strand, 40486557 - 40486496
Alignment:
Q  548 tagcctagtggctatagttcacacattttaatgtgaagaagtggggaattcggggttcgaac 609  Q
    |||||||||||||| || |||||||||| ||||||||||||||| |  | ||||||||||||    
T  40486557 tagcctagtggctagagctcacacatttaaatgtgaagaagtggagtgtccggggttcgaac 40486496  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 609
Target Start/End: Complemental strand, 51890915 - 51890852
Alignment:
Q  546 aatagcctagtggctatagttcacacattttaatgtgaagaagtggggaattcggggttcgaac 609  Q
    |||||||||||||||| || ||||||| || |||||| ||||||||||  | ||||||||||||    
T  51890915 aatagcctagtggctagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaac 51890852  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 609
Target Start/End: Complemental strand, 2629695 - 2629634
Alignment:
Q  548 tagcctagtggctatagttcacacattttaatgtgaagaagtggggaattcggggttcgaac 609  Q
    ||||||| |||||| || ||||||| || |||||| ||||||||||  ||||||||||||||    
T  2629695 tagcctaatggctagagctcacacaattaaatgtggagaagtggggtgttcggggttcgaac 2629634  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 609
Target Start/End: Original strand, 11294792 - 11294853
Alignment:
Q  548 tagcctagtggctatagttcacacattttaatgtgaagaagtggggaattcggggttcgaac 609  Q
    |||||||||||||| || ||| |||||| |||||| ||||||||||  | ||||||||||||    
T  11294792 tagcctagtggctagagctcaaacatttaaatgtggagaagtggggtgtccggggttcgaac 11294853  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 609
Target Start/End: Complemental strand, 49264642 - 49264581
Alignment:
Q  548 tagcctagtggctatagttcacacattttaatgtgaagaagtggggaattcggggttcgaac 609  Q
    |||||||||||||| || ||||||| || |||||| ||||||||||  | ||||||||||||    
T  49264642 tagcctagtggctagagctcacacaattaaatgtggagaagtggggtgtccggggttcgaac 49264581  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 545 - 593
Target Start/End: Complemental strand, 27241760 - 27241712
Alignment:
Q  545 aaatagcctagtggctatagttcacacattttaatgtgaagaagtgggg 593  Q
    ||||||||||||||||| || || |||||||||||||| ||||||||||    
T  27241760 aaatagcctagtggctagagctcgcacattttaatgtggagaagtgggg 27241712  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 609
Target Start/End: Original strand, 14804936 - 14804997
Alignment:
Q  548 tagcctagtggctatagttcacacattttaatgtgaagaagtggggaattcggggttcgaac 609  Q
    |||| ||||||||| |||||||||| || |||||| ||||||||||  | ||||||||||||    
T  14804936 tagcttagtggctagagttcacacaattaaatgtggagaagtggggtgtccggggttcgaac 14804997  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 609
Target Start/End: Original strand, 31124590 - 31124653
Alignment:
Q  546 aatagcctagtggctatagttcacacattttaatgtgaagaagtggggaattcggggttcgaac 609  Q
    |||||||||||||||| || ||||||| || |||||| |||||||||| || ||| ||||||||    
T  31124590 aatagcctagtggctagagctcacacaattaaatgtggagaagtggggtatccggagttcgaac 31124653  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 566 - 615
Target Start/End: Original strand, 41460624 - 41460674
Alignment:
Q  566 tcacacattttaa-tgtgaagaagtggggaattcggggttcgaactctaac 615  Q
    ||||||||||||| ||||||||||||||  ||||| |||||||||||||||    
T  41460624 tcacacattttaactgtgaagaagtgggatattcgaggttcgaactctaac 41460674  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 611
Target Start/End: Original strand, 4482546 - 4482615
Alignment:
Q  543 tcaaatagcctagtggctatagttcacacattttaa-tgtgaagaagtggggaattcggggttcgaactc 611  Q
    |||| |||||||||||||| || ||||||| ||||| |||| |||||||| | || ||||||||||||||    
T  4482546 tcaagtagcctagtggctagagctcacacaatttaattgtggagaagtggagtatccggggttcgaactc 4482615  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 611
Target Start/End: Original strand, 36313951 - 36313996
Alignment:
Q  566 tcacacattttaatgtgaagaagtggggaattcggggttcgaactc 611  Q
    ||||||||| ||||||| ||||||||||  ||||||||||||||||    
T  36313951 tcacacattataatgtggagaagtggggtgttcggggttcgaactc 36313996  T

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Target: scaffold0608 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 611
Target Start/End: Complemental strand, 9088 - 9019
Alignment:
Q  543 tcaaatagcctagtggctatagttcacacattttaa-tgtgaagaagtggggaattcggggttcgaactc 611  Q
    |||| |||||||||||||| || ||||||| ||||| |||| |||||||| | || ||||||||||||||    
T  9088 tcaagtagcctagtggctagagctcacacaatttaattgtggagaagtggagtatccggggttcgaactc 9019  T

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Target: scaffold0010 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 609
Target Start/End: Original strand, 236311 - 236372
Alignment:
Q  548 tagcctagtggctatagttcacacattttaatgtgaagaagtggggaattcggggttcgaac 609  Q
    ||||||||||| || || ||||||||||||||||| | ||||||||  | ||||||||||||    
T  236311 tagcctagtggttaaagctcacacattttaatgtggataagtggggtgtccggggttcgaac 236372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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