View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18078_low_11 (Length: 478)

Name: NF18078_low_11
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18078_low_11
NF18078_low_11
[»] chr1 (3 HSPs)
chr1 (49-233)||(8616880-8617064)
chr1 (367-461)||(8617204-8617298)
chr1 (42-172)||(48695772-48695904)
[»] chr2 (2 HSPs)
chr2 (50-172)||(28548442-28548566)
chr2 (108-144)||(10137144-10137180)
[»] chr4 (1 HSPs)
chr4 (42-172)||(29814393-29814525)
[»] chr3 (3 HSPs)
chr3 (42-172)||(19239224-19239356)
chr3 (42-172)||(54760593-54760725)
chr3 (108-144)||(53150498-53150534)
[»] chr7 (2 HSPs)
chr7 (42-145)||(47837569-47837672)
chr7 (42-117)||(8129450-8129525)


Alignment Details
Target: chr1 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 49 - 233
Target Start/End: Original strand, 8616880 - 8617064
Alignment:
Q  49 tgaagagtggaagaagatgaagtgtgttgtttttacaaaaatatccctgattttaaatctgaaatgtcttaattacccatgatgtctgtattgtgtctgc 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  8616880 tgaagagtggaagaagatgaagtgtgttgtttttacaaaaatatccctgattttaaatctgaaatgttttaattacccatgatgtctgtattgtgtctac 8616979  T
Q  149 atttctgtgtagttatcattgctgnnnnnnntaaaaccttagctatataataccaggttagaaaatttgattagtttgagaagcc 233  Q
    ||||||||||||||||||||||||       ||||||||||  |||||||||||||||||||||||||||| |||||||||||||    
T  8616980 atttctgtgtagttatcattgctgaaaaaaataaaaccttacttatataataccaggttagaaaatttgatcagtttgagaagcc 8617064  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 367 - 461
Target Start/End: Original strand, 8617204 - 8617298
Alignment:
Q  367 gatcttgtaatgataacaaaaatatttacaccagatgcactgacgacaaagtcattctttgattcaattttcgagaggacaccatccctacctca 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  8617204 gatcttgtaatgataacaaaaatatttacaccagatgcactgacgacaaagtcattctttgattcaattttcgagagaacgccatccctacctca 8617298  T

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Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 48695904 - 48695772
Alignment:
Q  42 gacgcagtgaagagtggaagaagatgaagtgtgttgtttttacaaaaatatccctgattttaaatctgaaatgtcttaattacccatgatgtctgtattg 141  Q
    ||||||| |||||| ||||||||||| ||||||||||||||||||||||  ||||| ||||| ||||||||||||| || | |||||  |||||||||||    
T  48695904 gacgcagagaagagaggaagaagatggagtgtgttgtttttacaaaaatgcccctgcttttatatctgaaatgtctaaactgcccatagtgtctgtattg 48695805  T
Q  142 tgtctgcatttctgtgt--agttatcattgctg 172  Q
    ||||   |||| |||||  ||||||||||||||    
T  48695804 tgtccaaatttatgtgttcagttatcattgctg 48695772  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 50 - 172
Target Start/End: Original strand, 28548442 - 28548566
Alignment:
Q  50 gaagagtggaagaagatgaagtgtgttgtttttacaaaaatatccctgattttaaatctgaaatgtcttaattacccatgatgtctgtattgtgtctgca 149  Q
    |||||| ||||||||||| ||||||||||||||||||||||  ||||| ||||| ||||||||||||| || |||||||| |||||||||||||||   |    
T  28548442 gaagagaggaagaagatggagtgtgttgtttttacaaaaatgcccctgcttttatatctgaaatgtctaaactacccatggtgtctgtattgtgtccaaa 28548541  T
Q  150 tttctgtgt--agttatcattgctg 172  Q
    ||| |||||  ||||||||||||||    
T  28548542 tttatgtgttcagttatcattgctg 28548566  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 10137144 - 10137180
Alignment:
Q  108 tgaaatgtcttaattacccatgatgtctgtattgtgt 144  Q
    ||||||| | |||||||||||||||||||||||||||    
T  10137144 tgaaatgacataattacccatgatgtctgtattgtgt 10137180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 29814525 - 29814393
Alignment:
Q  42 gacgcagtgaagagtggaagaagatgaagtgtgttgtttttacaaaaatatccctgattttaaatctgaaatgtcttaattacccatgatgtctgtattg 141  Q
    ||||||| |||||| ||||||||||| ||||||||||||||||||||||  ||||| ||||| ||||||||||||| || | |||||  |||||||||||    
T  29814525 gacgcagagaagagaggaagaagatggagtgtgttgtttttacaaaaatgcccctgcttttatatctgaaatgtctaaactgcccatagtgtctgtattg 29814426  T
Q  142 tgtctgcatttctgtgt--agttatcattgctg 172  Q
    ||||   |||| |||||  ||||||||||||||    
T  29814425 tgtccaaatttatgtgttcagttatcattgctg 29814393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 19239224 - 19239356
Alignment:
Q  42 gacgcagtgaagagtggaagaagatgaagtgtgttgtttttacaaaaatatccctgattttaaatctgaaatgtcttaattacccatgatgtctgtattg 141  Q
    ||||||| |||||| ||||||||||| ||||||||||||||||||||||  ||||| ||||| ||||||||||||| || | |||||  |||||||||||    
T  19239224 gacgcagagaagagaggaagaagatggagtgtgttgtttttacaaaaatgcccctgcttttatatctgaaatgtctaaactgcccatagtgtctgtattg 19239323  T
Q  142 tgtctgcatttctgtgt--agttatcattgctg 172  Q
    ||||   |||| |||||  ||||||||||||||    
T  19239324 tgtccaaatttatgtgttcagttatcattgctg 19239356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 54760725 - 54760593
Alignment:
Q  42 gacgcagtgaagagtggaagaagatgaagtgtgttgtttttacaaaaatatccctgattttaaatctgaaatgtcttaattacccatgatgtctgtattg 141  Q
    ||||||| |||||| ||||||||||| ||||||||||||||||||||||  ||||| ||||| ||||||||||||| || | |||||  |||||||||||    
T  54760725 gacgcagagaagagaggaagaagatggagtgtgttgtttttacaaaaatgcccctgcttttatatctgaaatgtctaaactgcccatagtgtctgtattg 54760626  T
Q  142 tgtctgcatttctgtgt--agttatcattgctg 172  Q
    ||||   |||| |||||  ||||||||||||||    
T  54760625 tgtccaaatttatgtgttcagttatcattgctg 54760593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 53150498 - 53150534
Alignment:
Q  108 tgaaatgtcttaattacccatgatgtctgtattgtgt 144  Q
    |||||||||  ||||||||||||||||||||||||||    
T  53150498 tgaaatgtcacaattacccatgatgtctgtattgtgt 53150534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 47837672 - 47837569
Alignment:
Q  42 gacgcagtgaagagtggaagaagatgaagtgtgttgtttttacaaaaatatccctgattttaaatctgaaatgtcttaattacccatgatgtctgtattg 141  Q
    ||||||| |||||| ||||||||||| ||||||||||||||||||||||  ||||| ||||| ||||||||||||| || | |||||  |||||||||||    
T  47837672 gacgcagagaagagaggaagaagatggagtgtgttgtttttacaaaaatgcccctgcttttatatctgaaatgtctaaactgcccatagtgtctgtattg 47837573  T
Q  142 tgtc 145  Q
    ||||    
T  47837572 tgtc 47837569  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 8129450 - 8129525
Alignment:
Q  42 gacgcagtgaagagtggaagaagatgaagtgtgttgtttttacaaaaatatccctgattttaaatctgaaatgtct 117  Q
    ||||||| |||||| ||||||||||| ||||||||||||||||||||||  ||||| ||||| |||||||||||||    
T  8129450 gacgcagagaagagaggaagaagatggagtgtgttgtttttacaaaaatgcccctgcttttatatctgaaatgtct 8129525  T

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