View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_low_12 (Length: 462)
Name: NF18078_low_12
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 176 - 302
Target Start/End: Complemental strand, 41232314 - 41232184
Alignment:
| Q |
176 |
acgtccaaattgcattggaacacaaaattagtgaacaca----acatataaccaaacgaagcattagtggaatggaatgaattctctcaattgttttcct |
271 |
Q |
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| T |
41232314 |
acgtccaaattgcattggaaaacaaaattagtaaacacatacaacatataaccaaaggaagcattagtggaatggaatgaattctctcaattgttttcct |
41232215 |
T |
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| Q |
272 |
ctgaatcatagtgaattttattattgaatgg |
302 |
Q |
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| T |
41232214 |
ctcaatcatagtcaattttattattgaatgg |
41232184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 11 - 180
Target Start/End: Complemental strand, 41234068 - 41233910
Alignment:
| Q |
11 |
tcatcacttatatatattttaggtaataaccaacacatacaatgtaaattttatacgttcaaatagagtaatagaatatcctaatttggcctgtgtttgt |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| |
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| T |
41234068 |
tcatcacttatatatattttaggtaataaccaacacatacaatgtaaattttatacgttcaaatagagtaatagaatatcctaatttagtttatgtttgt |
41233969 |
T |
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| Q |
111 |
gttgacagtagaatcacctctaacacgcgttttagctaaagcttaaatatatagtttctaatatcacgtc |
180 |
Q |
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| T |
41233968 |
-----------tatcaccgctaagatacgtttcagctgaagcttaaatatatagtttctaatatcacgtc |
41233910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 391 - 446
Target Start/End: Complemental strand, 41232095 - 41232040
Alignment:
| Q |
391 |
gaaagaattgaaaggatccaatgaatccccaaatttagcttctaaatgcttatctt |
446 |
Q |
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| T |
41232095 |
gaaacaattgaaaggatccaatgaatccccaaatttagcttctaaatgcttatctt |
41232040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 235
Target Start/End: Original strand, 19477652 - 19477754
Alignment:
| Q |
128 |
ctctaacacgcgttttagctaaagcttaaatatatagtttct-aatatcacgtccaaattgcattggaacacaaaattagtgaacacaacatataaccaa |
226 |
Q |
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||||||| ||||||| |||| |||||| ||||||||| || | ||||||||||||||||||| ||||| ||||||||||| |||| | ||||||| |
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| T |
19477652 |
ctctaacgcgcgtttcagcttaagcttgaatatatagcttttcaatatcacgtccaaattgc------acacagaattagtgaactcaacgtgtaaccaa |
19477745 |
T |
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| Q |
227 |
acgaagcat |
235 |
Q |
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|| |||||| |
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| T |
19477746 |
acaaagcat |
19477754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 235
Target Start/End: Original strand, 19548577 - 19548679
Alignment:
| Q |
128 |
ctctaacacgcgttttagctaaagcttaaatatatagtttct-aatatcacgtccaaattgcattggaacacaaaattagtgaacacaacatataaccaa |
226 |
Q |
| |
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||||||| ||||||| |||| |||||| ||||||||| || | ||||||||||||||||||| ||||| ||||||||||| |||| | ||||||| |
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| T |
19548577 |
ctctaacgcgcgtttcagcttaagcttgaatatatagcttttcaatatcacgtccaaattgc------acacagaattagtgaactcaacgtgtaaccaa |
19548670 |
T |
|
| Q |
227 |
acgaagcat |
235 |
Q |
| |
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|| |||||| |
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|
| T |
19548671 |
acaaagcat |
19548679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 19584111 - 19584009
Alignment:
| Q |
128 |
ctctaacacgcgttttagctaaagcttaaatatatagtttct-aatatcacgtccaaattgcattggaacacaaaattagtgaacacaacatataaccaa |
226 |
Q |
| |
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||||||| ||||||| |||| |||||| ||||||||| || | ||||||||||||||||||| ||||| ||||||||||| |||| | ||||||| |
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| T |
19584111 |
ctctaacgcgcgtttcagcttaagcttgaatatatagcttttcaatatcacgtccaaattgc------acacagaattagtgaactcaacgtgtaaccaa |
19584018 |
T |
|
| Q |
227 |
acgaagcat |
235 |
Q |
| |
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|| |||||| |
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|
| T |
19584017 |
acaaagcat |
19584009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 22710616 - 22710678
Alignment:
| Q |
128 |
ctctaacacgcgttttagctaaagcttaaatatatagtttct-aatatcacgtccaaattgca |
189 |
Q |
| |
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||||||| ||||||| |||| |||||| ||||||||| || | |||||||||||||||||||| |
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| T |
22710616 |
ctctaacgcgcgtttcagcttaagcttgaatatatagcttttcaatatcacgtccaaattgca |
22710678 |
T |
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