View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_low_14 (Length: 435)
Name: NF18078_low_14
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 10 - 418
Target Start/End: Original strand, 17096844 - 17097256
Alignment:
| Q |
10 |
aagaaaatatatcaaataacaaacgataaattattcactgaaatatatgttatcgtcgaaattaattacgggtaagtttgagtannnnnnnn-cgaacat |
108 |
Q |
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| T |
17096844 |
aagaaaatatatcaaataacaaacgataaattattcactgaaatatatgttatcgtcgaaattaattacgggtaagtttgagtatttttttttcgaacat |
17096943 |
T |
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| Q |
109 |
tttgttcatatgaaagtcgaagttttcgccaattgtttattttaatttattgattttgaaaataaaggttattgaagatttaannnnnnnnnnnnaacat |
208 |
Q |
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| T |
17096944 |
tttgttcatatgaaagttgaagttttcgccaattgtttattttaatttgttgattttgaaaataaaggttattgaagatttaatttttttt----aacat |
17097039 |
T |
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| Q |
209 |
ggcaaaatctttcatgatccattttgagatatagcataatatatgtttagagaaatcagaaaaaggtga-gctagttcaattaattaatacaaactaaaa |
307 |
Q |
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| T |
17097040 |
ggcaaaatctttcatgatccattttgagatatagcataatatatgtttagagaaatcagaaaaaggtgaggctagttcaattaattaatacaaactaaaa |
17097139 |
T |
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| Q |
308 |
ttaatttgttcattttatgtaagaaaaatt------aagagcaagacctttgatcacaatatttagagttggaaatgaaatggatttgatgtactcttga |
401 |
Q |
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| T |
17097140 |
ttaatttgttcattttatgtaagaaaaattaagagcaagagcaagacctttgatcacaatatttagagttggaaatgaaatggatttgatgtactcttga |
17097239 |
T |
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| Q |
402 |
atctgcatgtgcagtgt |
418 |
Q |
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| T |
17097240 |
atctgcatgtgcagtgt |
17097256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 17082020 - 17082072
Alignment:
| Q |
40 |
ttattcactgaaatatatgttatcgtcgaaattaattacgggtaagtttgagt |
92 |
Q |
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| T |
17082020 |
ttattcactcaaatatatgttatcctcgaaattaattcggggtaagtttgagt |
17082072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 322
Target Start/End: Original strand, 17082191 - 17082305
Alignment:
| Q |
210 |
gcaaaatctttcatgatccattttgagatatagcataatatatgtttagagaaatcagaaaaaggtgag-ctagttcaattaattaatacaaactaaaat |
308 |
Q |
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|||||| |||||| ||| ||||| | |||| ||||||||||||| |||| |||| | |||| |||| |||||||||||| ||||||||||||||| |
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| T |
17082191 |
gcaaaacctttcaaaatcaattttcaaatattgcataatatatgtatagaaaaattataaaactatgaggctagttcaattagctaatacaaactaaaac |
17082290 |
T |
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| Q |
309 |
taa-tttgttcattt |
322 |
Q |
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| T |
17082291 |
taattttgttcattt |
17082305 |
T |
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