View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_low_15 (Length: 433)
Name: NF18078_low_15
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 15 - 414
Target Start/End: Original strand, 6285473 - 6285874
Alignment:
| Q |
15 |
cataggatgctgaaacacctggtggatttacctttgatataatatcaaataggtttaattcaatggcagattttaacacagaagtataaatcattggacc |
114 |
Q |
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| T |
6285473 |
cataggatgctgaaacacctggtggatttgcctttgatataatatcaaataggtttaattcaattgcagattttaacacagaagtataaatcattggacc |
6285572 |
T |
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| Q |
115 |
acaacaaagaagcatagcagagagacatgcatcatcatcttcttctacttcaaaaggtgaacattttggaagaacatgaatatcttcagaaatagatccc |
214 |
Q |
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| T |
6285573 |
acaacaaagaagcatagcagagagacatgcatcatcatcttctactacttcaaaaggtgaacattttggaagaacatgaatatcttcagaaatagatccc |
6285672 |
T |
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| Q |
215 |
atgttttggtttcttttag--tttgagtttacaatgcatgttggtaacatgcatttatatcatatatgtattgatcttattggtgaaagttattacctat |
312 |
Q |
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| T |
6285673 |
atgttttggtttcttttagtttttgagtttacaatgcatgttggtaacatgcatttatatcatatatgtattgatcttattggtgaaagttattacctat |
6285772 |
T |
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| Q |
313 |
gttgtatatgtttgtctttaagtgtgtgatgatgttggttgttttaacgtattgtacatcattagagattgacaaaaaatgactgtgactgcaatataca |
412 |
Q |
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| T |
6285773 |
gttgtatatgtttgtctttaagtgtgtgatgatgttggttgttttaacgtattgtacatcattagagattgacaaaaaatgactgtgactgcaatataca |
6285872 |
T |
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| Q |
413 |
at |
414 |
Q |
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| T |
6285873 |
at |
6285874 |
T |
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