View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_low_16 (Length: 430)
Name: NF18078_low_16
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_16 |
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| [»] scaffold0608 (3 HSPs) |
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Alignment Details
Target: scaffold0608 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: scaffold0608
Description:
Target: scaffold0608; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 47 - 416
Target Start/End: Original strand, 3660 - 4030
Alignment:
| Q |
47 |
aagaaatatgcatggattaattaaattaaaattaannnnnnn-gaattgtaatcccaattatactttcattaagattattatcaacaataaatcaagatt |
145 |
Q |
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| T |
3660 |
aagaaatatgcatggattaattaaattaaaattaattttttttgaattgtaatcccaattatactttcattaagattattatcaacaataaatcaagatt |
3759 |
T |
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| Q |
146 |
tgtctatatttaattaatatactaataactaaagaagctatctttttgaaaaatagttctattttttatttgggagaataacttcaagttttgtacactt |
245 |
Q |
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| T |
3760 |
tgtctatatttaattaatatactaataactaaagaagctatatttttgaaaaatagttctattttttatttgggagaataacttcaagttttgtacactt |
3859 |
T |
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| Q |
246 |
taaactagaatttaagtattatattttgatacaactagagcttaaatttgtttagactatgatttaaacttgctgtatgttagctattattgattaacgt |
345 |
Q |
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| T |
3860 |
taaactagaatttaagtattatattttgatacaactagagcttaaatttgtttagactataatttaaacttgctgtatgttagctattattgattaacgt |
3959 |
T |
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| Q |
346 |
gggtcggtaacctctaaacccaacaattaaaagtcttgttattttggtcaagatccaaattgggttctttt |
416 |
Q |
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| T |
3960 |
gggttggtaacctctaaacccaacaattaaaagtcttgttattttggtcaagatccaaattgggttctttt |
4030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 325 - 416
Target Start/End: Complemental strand, 7034 - 6943
Alignment:
| Q |
325 |
ttagctattattgattaacgtgggtcggtaacctctaaacccaacaattaaaagtcttgttattttggtcaagatccaaattgggttctttt |
416 |
Q |
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| T |
7034 |
ttagctattattgattaacgtgggttggtaacctctaaacccaacaattaaaagtcatgttattttggtcaagatccaaattgggttctttt |
6943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 294
Target Start/End: Complemental strand, 7105 - 7048
Alignment:
| Q |
236 |
ttgtacactttaaactagaatttaagtattatattttgatacaactagagcttaaattt |
294 |
Q |
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| T |
7105 |
ttgtaaactttaaactagagttaaa-tattatattttgatagaactagagcttaaattt |
7048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 47 - 416
Target Start/End: Original strand, 11108223 - 11108593
Alignment:
| Q |
47 |
aagaaatatgcatggattaattaaattaaaattaannnnnnn-gaattgtaatcccaattatactttcattaagattattatcaacaataaatcaagatt |
145 |
Q |
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| T |
11108223 |
aagaaatatgcatggattaattaaattaaaattaattttttttgaattgtaatcccaattatactttcattaagattattatcaacaataaatcaagatt |
11108322 |
T |
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| Q |
146 |
tgtctatatttaattaatatactaataactaaagaagctatctttttgaaaaatagttctattttttatttgggagaataacttcaagttttgtacactt |
245 |
Q |
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| T |
11108323 |
tgtctatatttaattaatatactaataactaaagaagctatatttttgaaaaatagttctattttttatttgggagaataacttcaagttttgtacactt |
11108422 |
T |
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| Q |
246 |
taaactagaatttaagtattatattttgatacaactagagcttaaatttgtttagactatgatttaaacttgctgtatgttagctattattgattaacgt |
345 |
Q |
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| T |
11108423 |
taaactagaatttaagtattatattttgatacaactagagcttaaatttgtttagactataatttaaacttgctgtatgttagctattattgattaacgt |
11108522 |
T |
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| Q |
346 |
gggtcggtaacctctaaacccaacaattaaaagtcttgttattttggtcaagatccaaattgggttctttt |
416 |
Q |
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| T |
11108523 |
gggttggtaacctctaaacccaacaattaaaagtcttgttattttggtcaagatccaaattgggttctttt |
11108593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 236 - 416
Target Start/End: Complemental strand, 11111669 - 11111506
Alignment:
| Q |
236 |
ttgtacactttaaactagaatttaagtattatattttgatacaactagagcttaaatttgtttagactatgatttaaacttgctgtatgttagctattat |
335 |
Q |
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||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||| | |||| ||| ||| ||||||||| |
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| T |
11111669 |
ttgtaaactttaaactagagtttaaatattatattttgatagaactagagcttaaatttttgtagagtataatt-----------------agctattat |
11111587 |
T |
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| Q |
336 |
tgattaacgtgggtcggtaacctctaaacccaacaattaaaagtcttgttattttggtcaagatccaaattgggttctttt |
416 |
Q |
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| T |
11111586 |
tgattaacgtgggttggtaacctctaaacccaacaattaaaagtcatgttattttggtcaagatccaaattgggttctttt |
11111506 |
T |
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