View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_low_17 (Length: 426)
Name: NF18078_low_17
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 8901142 - 8901496
Alignment:
| Q |
1 |
ccttcaaacatcaagacaacgtcaatatatggaatggaagtttctcccggattaatctaactatttgattttattcatatctttacataatttaatttta |
100 |
Q |
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| T |
8901142 |
ccttcaaacatcaagacaacatcaatatatggaatggaagtttctcccggattaatctaactatttgattttattcgtatctttacataatttaatttta |
8901241 |
T |
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| Q |
101 |
aatgagaaatattagcattttttattagtacgaggagtgaatttattgcttcacatcacttcaattcccacgttttaccccaaaccaccaagtcacttat |
200 |
Q |
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| T |
8901242 |
aatgagaaatattagcattttttattagtacgaggagtgaatttattgctccacgtcacttcaattcccacgttttaccccaaaccaccaagtcacttat |
8901341 |
T |
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| Q |
201 |
ttacgatacagtcaa-nnnnnnnnnnnnnnnaatgttaattaaatatatccataaaataaaagcgatttgatatttaaaatattttataattgacttcag |
299 |
Q |
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| T |
8901342 |
ttacaatatagtcaatttttttaatttttttaatgttaattaaatatatccataaaataaaagcgatttgatatttaaaatattttataattgacttcag |
8901441 |
T |
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| Q |
300 |
agagatcttggttgt-gtagaacatgttggcattttttatttgagtcaatttgtt |
353 |
Q |
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| T |
8901442 |
agagatcttggttgtggtagaacatgttggcattttttatttgagtcaatttgtt |
8901496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 368
Target Start/End: Original strand, 8901500 - 8901537
Alignment:
| Q |
331 |
ttttttatttgagtcaatttgttggcacttggtaattg |
368 |
Q |
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| T |
8901500 |
ttttttttttgagtcaatttgttggcacttggtaattg |
8901537 |
T |
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