View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_low_19 (Length: 412)
Name: NF18078_low_19
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 403
Target Start/End: Complemental strand, 33788235 - 33787830
Alignment:
| Q |
19 |
gttggtacactgccacagatatcttctccctacataatggtcaggtgagtttatttatttttactttctattaggtattttgttt--------------- |
103 |
Q |
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|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33788235 |
gttggtgcactgccacaaatatcttctccctacataatggtcaggtgagtttatttatttttactttctattaggtattttgtttttggtgaatatgaaa |
33788136 |
T |
|
| Q |
104 |
------gtatttcggctcgtctaagattagttgttagtaaagtgagaatatcaatgtttgatactttaaccgctgtgaatttgttatacatataatatca |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33788135 |
atctttgtatttcggctcgtctaagattagttgttagtaaagtgagaaaatcaatgtttgatactttaaccgctgtgaatttgttatacatataatatca |
33788036 |
T |
|
| Q |
198 |
accatagatttgtttatctacgattgatattattcaatttactctcgacaacgagttgctcactttaagaggagtctgatccctgaaatgaacatgtcat |
297 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33788035 |
accatagatttgtttatctacgattgatattactcaatttactctcgacaacgagttgctcactttaagaggagtctgatccctgaaatgaacatgtcat |
33787936 |
T |
|
| Q |
298 |
gtgtgacaaatttctttctattgctgatgtttctttggtaaagagctacttttgtatattcacttgtgtgtgtgcacttcaaaaccattctttcaatgcc |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33787935 |
gtgtgacaaatttctttctattgctgatgtttctttggtaaagagctacttttgtatattcacttgtgtgtgtgcacttcaaaaccattctttcaatgcc |
33787836 |
T |
|
| Q |
398 |
ctttgc |
403 |
Q |
| |
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|||||| |
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| T |
33787835 |
ctttgc |
33787830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 42947872 - 42947929
Alignment:
| Q |
186 |
catataatatcaaccatagatttgtttatctacgattgatattattcaatttactctc |
243 |
Q |
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| T |
42947872 |
catataatatcaaccattgatttgtttatcaacggttgatattactcgttttactctc |
42947929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 12387903 - 12387849
Alignment:
| Q |
186 |
catataatatcaaccatagatttgtttatctacgattgatattattcaatttact |
240 |
Q |
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|||||||||| |||| | |||||||||||| ||||||||||||||| | |||||| |
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| T |
12387903 |
catataatataaaccgttgatttgtttatcaacgattgatattatttattttact |
12387849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 37951618 - 37951696
Alignment:
| Q |
186 |
catataatatcaaccatagatttgtttatctacgattgatattattcaatttactctcgacaacgagttgctcacttta |
264 |
Q |
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|||||| ||||||||| |||||||||||| || ||||||||| ||| ||||||||| | | |||||||||||||||| |
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| T |
37951618 |
catatattatcaaccagtgatttgtttatcaacagttgatattactcactttactctctaaagcgagttgctcacttta |
37951696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 19256980 - 19257029
Alignment:
| Q |
184 |
tacatataatatcaaccatagatttgtttatctacgattgatattattca |
233 |
Q |
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||||||||||||||||||| ||||||| |||| ||| |||||||| |||| |
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| T |
19256980 |
tacatataatatcaaccattgatttgtatatccacggttgatattgttca |
19257029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 39432797 - 39432725
Alignment:
| Q |
188 |
tataatatcaaccatagatttgtttatctacgattgatattattcaatttactctcgacaacgagttgctcac |
260 |
Q |
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||||||||| |||| | |||| |||||| ||| ||||||||| ||| ||||||||| ||| ||||||||||| |
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| T |
39432797 |
tataatatcgaccaaatatttatttatcaacggttgatattactcactttactctctacagtgagttgctcac |
39432725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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