View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_low_21 (Length: 390)
Name: NF18078_low_21
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 27425045 - 27424696
Alignment:
| Q |
18 |
acagttacatatattttctaatgtacaacaagaatttacattctagtctacgactctgaccatgatccgtaaagaagaactttaaattattgaactgttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| |
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| T |
27425045 |
acagttacatatattttctaatgtacaacaagaatttacattctagtctacgactctgaccatgatccgtaacgaagaactctacattattgaactgttg |
27424946 |
T |
|
| Q |
118 |
gcgagtagtccggacatactcttcaacttttcaatgtcaagtttaacctgaaaacaacatccgaacatactgagcacaaagactcagtaacatataatat |
217 |
Q |
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||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||| ||||| |
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| T |
27424945 |
gcgagtagtccag-catactcttaaacttttcaatgtcaagtttaacctgaaaacaacatccaaaca----gagcacaaagactcaataacatagaatat |
27424851 |
T |
|
| Q |
218 |
aaaaagtatgcactttgatgttctcagccatgtctggtgtactagacatggaaaaagttctctcgtcaatattaccaattagcaaaccaacccaacatct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27424850 |
aaaaagtatgcactttgatgttctcagccatgtctggtgtactagacatggaaaaagttctctcgtcaatattaccaattagcaaaccaacccaacatct |
27424751 |
T |
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| Q |
318 |
tcataattaattaatactttaaagctctaaattctaatataagaatgctcaatatgaga |
376 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27424750 |
tcataat----taatactttaaagctctaaattctaatataagaatgctcaatatgaga |
27424696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 119 - 269
Target Start/End: Original strand, 45575474 - 45575620
Alignment:
| Q |
119 |
cgagtagtccggacatactcttcaacttttcaatgtcaagtttaacctgaaaacaacatccgaacatactgagcacaaagactcagtaacatataatata |
218 |
Q |
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| T |
45575474 |
cgagtagtccggacatacttttcaactttccaatgtcgagctaaacgtgaaaatatcacccaaacatagtgagcacaaagactcaataacatagaatata |
45575573 |
T |
|
| Q |
219 |
aaaagtatgcactttgatgttctcagccatgtctggtgtactagacatgga |
269 |
Q |
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|||||| |||||||||||| || ||||| |||||||||||| |||||| |
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| T |
45575574 |
aaaagt----actttgatgttcccaaccatgcctggtgtactaggcatgga |
45575620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 38442807 - 38442859
Alignment:
| Q |
106 |
attgaactgttggcgagtagtccggacatactcttcaacttttcaatgtcaag |
158 |
Q |
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|||||| ||||| ||| |||| |||||||||||||||||||| |||| ||||| |
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| T |
38442807 |
attgaattgttgacgaatagttcggacatactcttcaactttccaatatcaag |
38442859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 7e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 22 - 298
Target Start/End: Original strand, 25747954 - 25748227
Alignment:
| Q |
22 |
ttacatatattttctaatgtacaacaagaatttacattctagtctacgactctgaccatgatccg-taaagaagaactttaaattattgaactgttggcg |
120 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| | | || |||||| |||||| ||||||| ||| |||||||| || ||| ||||||||| || |
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| T |
25747954 |
ttacatatatttcaaaatgtacaacaagaatttacaattttgtatacgaccctgaccgtgatccgataacgaagaactctacatt---gaactgttgacg |
25748050 |
T |
|
| Q |
121 |
agtagtccggacatactcttcaacttttcaatgtcaagtttaacctgaaaacaacatccgaacatactgagcacaaagactcagtaacatataatata-a |
219 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||| ||||||| ||||| |||||| |||| ||||||||||| ||||||| |||||| | |
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| T |
25748051 |
agtagtccggacatactcttcaactttccaatatcaagtttaaccagaaaacatcatccaaacatagtgagtacaaagactcaataacatagaatataca |
25748150 |
T |
|
| Q |
220 |
aaagtatgcactttgatgttctcagccatgtctggtgtactagacatggaaaaagttctctcgtcaatattaccaatta |
298 |
Q |
| |
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| | ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||| ||||| |
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| T |
25748151 |
ataaaatgcactttgatgttctcagccatgtctg--gtactagacatggaaaaagctctctcatcaatattactaatta |
25748227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 28 - 273
Target Start/End: Complemental strand, 20562930 - 20562686
Alignment:
| Q |
28 |
atattttctaatgtacaacaagaatttacattctagtctacgactctgaccatgatccg-taaagaagaactttaaattattgaactgttggcgagtagt |
126 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||| || ||||||| | ||| ||||||| ||| |||||||| || ||| ||||||||| |||||||| |
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| T |
20562930 |
atattttaaaatgtacaacaagaatttacaatcttgtatacgacttttaccgtgatccgataacgaagaactctacatt---gaactgttgacgagtagt |
20562834 |
T |
|
| Q |
127 |
ccggacatactcttcaacttttcaatgtcaagtttaacctgaaaacaacatccgaacatactgagcacaaagactcagtaacatataatataaaa-agta |
225 |
Q |
| |
|
||| |||||||||| ||||||||||||||||| ||||||||| |||| ||||| |||||| |||| |||||||||| |||||||| ||||||||| | | |
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| T |
20562833 |
ccgaacatactctttaacttttcaatgtcaagcttaacctgataacatcatccaaacatagtgagtacaaagactcggtaacataaaatataaaataaaa |
20562734 |
T |
|
| Q |
226 |
tgcactttgatgttctcagccatgtctggtgtactagacatggaaaaa |
273 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
20562733 |
tgcaccttgatgttctcagccatgtccggtgtactaaacatggaaaaa |
20562686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 33104271 - 33104204
Alignment:
| Q |
106 |
attgaactgttggcgagtagtccggacatactcttcaacttttcaatgtcaagtttaacctgaaaaca |
173 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||| || |||||||||| | |||||||||||| |
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| T |
33104271 |
attgaactgttgattagtagtccggacatacttttcaatattccaatgtcaagataaacctgaaaaca |
33104204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 106 - 265
Target Start/End: Complemental strand, 18450715 - 18450560
Alignment:
| Q |
106 |
attgaactgttggcgagtagtccggacatactcttcaacttttcaatgtcaagtttaacctgaaaacaacatccgaacatactgagcacaaagactcagt |
205 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||||| ||||||||| ||||| || | |||||||||||| ||| | |||||| |||||||||||| ||||| |
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|
| T |
18450715 |
attgaaatgttgacgagtagtctggacatacttttcaactttctgatgtctagctaaacctgaaaacatcattcaaacatagtgagcacaaagattcagt |
18450616 |
T |
|
| Q |
206 |
aacatataatataaaaagtatgcactttgatgttctcagccatgtctggtgtactagaca |
265 |
Q |
| |
|
|||||| |||||||||||||| |||||| |||||||||||||||||||||||||||| |
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|
| T |
18450615 |
aacatagaatataaaaagtat----tttgatattctcagccatgtctggtgtactagaca |
18450560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 18337865 - 18337760
Alignment:
| Q |
106 |
attgaactgttggcgagtagtccggacatactcttcaacttttcaatgtcaagtttaacctgaaaacaacatccgaacatactgagcacaaagactcagt |
205 |
Q |
| |
|
||||||||| || |||||| ||||| |||||| ||||||||| ||||||||| | ||| || ||||| |||| |||||| |||||| ||||||||||| |
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|
| T |
18337865 |
attgaactgctgacgagtaatccggtcatacttttcaactttctaatgtcaagataaacttggaaacatcatctaaacatagtgagcataaagactcagt |
18337766 |
T |
|
| Q |
206 |
aacata |
211 |
Q |
| |
|
|||||| |
|
|
| T |
18337765 |
aacata |
18337760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 106 - 283
Target Start/End: Complemental strand, 7381805 - 7381630
Alignment:
| Q |
106 |
attgaactgttggcgagtagtccggacatactcttcaacttttcaatgtcaagtttaacctgaaaacaacatccga-acatactgagcacaaa--gactc |
202 |
Q |
| |
|
|||||| ||||| |||||||| |||||||||| |||||||| |||| |||| | ||||||||||| || || | ||||| |||||||||| ||||| |
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|
| T |
7381805 |
attgaattgttgacgagtagttcggacatacttctcaactttccaatatcaaactagacctgaaaacatcaccccagacatagtgagcacaaaaagactc |
7381706 |
T |
|
| Q |
203 |
agtaacatataatataaaaagtatgcactttgatgttctcagccatgtctggtgtactagacatggaaaaagttctctcgt |
283 |
Q |
| |
|
|||||||| || |||| | ||| | ||||||||||| |||||||||||||| |||||||||| ||| ||||||||| |
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|
| T |
7381705 |
ggtaacata-aacataatatatat----tgtgatgttctcaaccatgtctggtgtattagacatggagaaaattctctcgt |
7381630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 20384863 - 20384916
Alignment:
| Q |
106 |
attgaactgttggcgagtagtccggacatactcttcaacttttcaatgtcaagt |
159 |
Q |
| |
|
|||||||||||| ||||||||| ||||| || |||||||||| |||||||||| |
|
|
| T |
20384863 |
attgaactgttgacgagtagtctagacatgcttttcaactttttaatgtcaagt |
20384916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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