View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_low_24 (Length: 385)
Name: NF18078_low_24
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_24 |
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| [»] chr4 (10 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 15 - 385
Target Start/End: Original strand, 36369748 - 36370115
Alignment:
| Q |
15 |
atcaaaccaagatttgtctggagagattggtgctcaaagcaacacacattcaaatctaccattcttcagctttagaacaataataacagctacaacaaat |
114 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36369748 |
atcaaaccaatattcgtctggagagattggtgctcaaagctacacacattcaaatcatccattcttcagctttagaacaattataacagctacaacaaat |
36369847 |
T |
|
| Q |
115 |
tttagtcatgagaataagcttggacaaggtggatttggctctgtctataaggtaattaagtgcaactctacattgagctactgattcaagaagtgaaaac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36369848 |
tttagtcatgagaataagcttggacaaggtggatttggctctgtctataaggtaattaagtgcaactctacattgagctactgattcaagaagtgaaaac |
36369947 |
T |
|
| Q |
215 |
atccttcacctctttatattcatttcaattacattatattaatggctgcaaaaatagtgatattgaagagataaaaatttcagggttgcttggttagtgg |
314 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36369948 |
atccttcatctctttatattcatttcaattacattatattaatggctgcaaaaatagtgatattgaagtgataaaaatttcagggttgcttggttagtgg |
36370047 |
T |
|
| Q |
315 |
aaaagagattgcagtgaaaagattgttgtccagagattcaggtcaaggaaaagaagagtttaaaaatgaag |
385 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36370048 |
aaaagagattgcagtgaaaaga---ttgtccagagattcaggtcaaggcaaagaagagtttaaaaatgaag |
36370115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 45 - 385
Target Start/End: Original strand, 36388735 - 36389078
Alignment:
| Q |
45 |
tgctcaaagcaacacacattcaaatctaccattcttcagctttagaacaataataacagctacaacaaattttagtcatgagaataagcttggacaaggt |
144 |
Q |
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||||||||||||||||||| |||||||||| || |||||||||| ||| ||||| |||||||||| ||||| | |||||||||||||||||||||||||| |
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| T |
36388735 |
tgctcaaagcaacacacatccaaatctaccctttttcagctttaaaacgataatgacagctacaagaaattgtggtcatgagaataagcttggacaaggt |
36388834 |
T |
|
| Q |
145 |
ggatttggctctgtctataaggtaattaagtgcaactctacattgagctactgattcaagaagtgaaaacatccttcacctctttatattcatttcaatt |
244 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36388835 |
ggatttggctctgtctataaggtaattaagtgcaactctacattgagctactgaatcaagaagtgaatacatccttcacctctttatattcatttcaata |
36388934 |
T |
|
| Q |
245 |
acattat-attaatggctgcaaaaatagtga-----tattgaagagataaaaatttcagggttgcttggttagtggaaaagagattgcagtgaaaagatt |
338 |
Q |
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|||||| | || | ||||| |||| ||| ||| |||||| ||| |||||||||| ||||||||| |||| ||||||| |||||||||||||| |
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| T |
36388935 |
gcattataaaaaaatgatgcaagaataatgaaatgggatttaagagagaaatatttcagggtagcttggttaatggacaagagatagcagtgaaaagatt |
36389034 |
T |
|
| Q |
339 |
gttgtccagagattcaggtcaaggaaaagaagagtttaaaaatgaag |
385 |
Q |
| |
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|| | || | |||||||||||||||||||||||||||||| ||||| |
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| T |
36389035 |
gtcg--ca-aaattcaggtcaaggaaaagaagagtttaaaactgaag |
36389078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 36 - 385
Target Start/End: Original strand, 36375007 - 36375355
Alignment:
| Q |
36 |
agagattggtgctcaaagcaacacacattcaaatctaccattcttcagctttagaacaataataacagctacaacaaattttagtcatgagaataagctt |
135 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||| || || |||||||||| ||| || ||||||||||||| | ||||||||||| ||||||||||| |
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| T |
36375007 |
agagaatggtgctcaaagcaacacacatccaaatcttccctttttcagctttaaaacgattataacagctacaagagattttagtcatcagaataagctt |
36375106 |
T |
|
| Q |
136 |
ggacaaggtggatttggctctgtctataaggtaattaagtgcaactctacattgagctactgattcaagaagtgaaaacatccttcacctctttatattc |
235 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||| || ||| |||||| || |||||| ||||||||||||| |
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| T |
36375107 |
ggacaaggtggatttggctctgtctataagg----taagtgaaactctacattgagatactcatgcaaaaagtgacaatatccttagcctctttatattc |
36375202 |
T |
|
| Q |
236 |
atttcaattacattat--attaatggctgcaaaaatagtga-----tattgaagagataaaaatttcagggttgcttggttagtggaaaagagattgcag |
328 |
Q |
| |
|
|||||||| |||||| | ||||| |||||||||| ||| ||| |||||| ||| |||||||||||||||||||| |||| ||||||| |||| |
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| T |
36375203 |
atttcaatcgcattattaaaaaatgg-tgcaaaaataatgaaatgggatttaagagagaaatatttcagggttgcttggttaatggacaagagatagcag |
36375301 |
T |
|
| Q |
329 |
tgaaaagattgttgtccagagattcaggtcaaggaaaagaagagtttaaaaatgaag |
385 |
Q |
| |
|
|||||||| ||||| | | |||||||||||||||||||||||||||||| ||||| |
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| T |
36375302 |
tgaaaaga---ttgtcgaaaaattcaggtcaaggaaaagaagagtttaaaactgaag |
36375355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 36 - 384
Target Start/End: Original strand, 36406048 - 36406395
Alignment:
| Q |
36 |
agagattggtgctcaaagcaacacacattcaaatctaccattcttcagctttagaacaataataacagctacaacaaattttagtcatgagaataagctt |
135 |
Q |
| |
|
||||| |||||||| || ||||| |||| |||||||||| || |||||||||| ||| ||||| |||||||||| ||||| | |||| ||||||||||| |
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| T |
36406048 |
agagaatggtgctccaaacaacagacatccaaatctaccctttttcagctttaaaacgataatgacagctacaaaaaattgtgatcataagaataagctt |
36406147 |
T |
|
| Q |
136 |
ggacaaggtggatttggctctgtctataaggtaattaagtgcaactctacattgagctactgattcaagaagtgaaaacatccttcacctctttatattc |
235 |
Q |
| |
|
|||||||||||||||||||||||||| |||| | |||| ||||||||||| |||||||||| |||||||||| |||||| |||||||||||||||| |
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|
| T |
36406148 |
ggacaaggtggatttggctctgtctacaagg----tgagtgaaactctacattaagctactgatgcaagaagtgacaacatcagtcacctctttatattc |
36406243 |
T |
|
| Q |
236 |
atttcaattacattat--attaatggctgcaaaaatagtga-----tattgaagagataaaaatttcagggttgcttggttagtggaaaagagattgcag |
328 |
Q |
| |
|
|||||||| ||||||| | ||||| |||||||||| ||| ||| |||||||||| |||||||||||||||||||| |||| |||||||||||| |
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| T |
36406244 |
atttcaatcacattattaaaaaatgg-tgcaaaaataatgaaatatgatttaagagataaatatttcagggttgcttggttaatggacaagagattgcag |
36406342 |
T |
|
| Q |
329 |
tgaaaagattgttgtccagagattcaggtcaaggaaaagaagagtttaaaaatgaa |
384 |
Q |
| |
|
| |||||| |||||||||||||| |||||||| |||| |||||||||||||||| |
|
|
| T |
36406343 |
ttaaaaga---ttgtccagagattctggtcaaggcaaagtagagtttaaaaatgaa |
36406395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 49 - 384
Target Start/End: Original strand, 36428126 - 36428460
Alignment:
| Q |
49 |
caaagcaacacacattcaaatctaccattcttcagctttagaacaataataacagctacaacaaattttagtcatgagaataagcttggacaaggtggat |
148 |
Q |
| |
|
||||||||||||||| |||||||||| || |||||||||| ||| ||||| |||||||||| ||||| | |||||||||||||||||||||||||||||| |
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|
| T |
36428126 |
caaagcaacacacatccaaatctaccctttttcagctttaaaacgataatgacagctacaagaaattgtggtcatgagaataagcttggacaaggtggat |
36428225 |
T |
|
| Q |
149 |
ttggctctgtctataaggtaattaagtgcaactctacattgagctactgattcaagaagtgaaaacatccttcacctctttatattcatttcaattacat |
248 |
Q |
| |
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|||| ||||||||||||| |||||| |||||||||||||| |||| || ||| |||||| || |||||| ||||||||||||||||||||| ||| |
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| T |
36428226 |
ttggttctgtctataagg----taagtgaaactctacattgagatactcatgcaaaaagtgacaatatccttagcctctttatattcatttcaatcgcat |
36428321 |
T |
|
| Q |
249 |
--tatattaatggctgcaaaaatagtga-----tattgaagagataaaaatttcagggttgcttggttagtggaaaagagattgcagtgaaaagattgtt |
341 |
Q |
| |
|
| || ||||| |||||||||| ||| ||| |||||| ||| ||||||||||||||||||||||||| ||||||| |||||||||||| || |
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|
| T |
36428322 |
catttaaaaatgg-tgcaaaaataatgaaatgggatttaagagacaaacatttcagggttgcttggttagtggacaagagatagcagtgaaaaga---tt |
36428417 |
T |
|
| Q |
342 |
gtccagagattcaggtcaaggaaaagaagagtttaaaaatgaa |
384 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||| |
|
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| T |
36428418 |
gtccagagattcaggtcaaggcaaagaagagtttaagaatgaa |
36428460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 49 - 384
Target Start/End: Original strand, 36418146 - 36418480
Alignment:
| Q |
49 |
caaagcaacacacattcaaatctaccattcttcagctttagaacaataataacagctacaacaaattttagtcatgagaataagcttggacaaggtggat |
148 |
Q |
| |
|
||||||||||| ||| |||||||||| || |||||||||| ||| ||||| |||||||||| ||||| | || |||||||||||||||||||||||||| |
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|
| T |
36418146 |
caaagcaacacgcatccaaatctaccctttttcagctttaaaacgataatgacagctacaagaaattgtgatcttgagaataagcttggacaaggtggat |
36418245 |
T |
|
| Q |
149 |
ttggctctgtctataaggtaattaagtgcaactctacattgagctactgattcaagaagtgaaaacatccttcacctctttatattcatttcaattacat |
248 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||| |||| || ||| |||||| || |||||| ||||||||||||||||||| || ||| |
|
|
| T |
36418246 |
ttggctctgtctataagg----taagtgaaactctacattgagatactcatgcaaaaagtgacaatatccttagcctctttatattcatttcacttgcat |
36418341 |
T |
|
| Q |
249 |
tat--attaatggctgcaaaaatagtga-----tattgaagagataaaaatttcagggttgcttggttagtggaaaagagattgcagtgaaaagattgtt |
341 |
Q |
| |
|
||| | ||| | |||||||||| ||| ||| |||||| ||| ||||||||| | |||| | |||| ||||||| |||||||||||| || |
|
|
| T |
36418342 |
tattaaaaaatag-tgcaaaaataatgaaatgggatttaagagacaaacatttcagggctttttggaaaatggacaagagatagcagtgaaaaga---tt |
36418437 |
T |
|
| Q |
342 |
gtccagagattcaggtcaaggaaaagaagagtttaaaaatgaa |
384 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||| |||||| |
|
|
| T |
36418438 |
gtccagagattctggtcaaggcaaagaagagtttaagaatgaa |
36418480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 43 - 217
Target Start/End: Original strand, 36434649 - 36434819
Alignment:
| Q |
43 |
ggtgctcaaagcaacacacattcaaatctaccattcttcagctttagaacaataataacagctacaacaaattttagtcatgagaataagcttggacaag |
142 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| || |||||||||| ||| ||||| |||||||||| ||||| | |||||||||||||||||||||||| |
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|
| T |
36434649 |
ggtgttcaaagcaacacacatccaaatctaccctttttcagctttaaaacgataatgacagctacaagaaattgtggtcatgagaataagcttggacaag |
36434748 |
T |
|
| Q |
143 |
gtggatttggctctgtctataaggtaattaagtgcaactctacattgagctactgattcaagaagtgaaaacatc |
217 |
Q |
| |
|
||||||||||||||||||||||||||| | || || ||||||||||||||| | ||||||||||||||||| |
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|
| T |
36434749 |
gtggatttggctctgtctataaggtaagtgag----accctacattgagctactattgcaagaagtgaaaacatc |
36434819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 36 - 196
Target Start/End: Original strand, 36398314 - 36398470
Alignment:
| Q |
36 |
agagattggtgctcaaagcaacacacattcaaatctaccattcttcagctttagaacaataataacagctacaacaaattttagtcatgagaataagctt |
135 |
Q |
| |
|
||||| || ||||||||||| ||||||| |||||||||| || |||||| ||| ||| ||||| ||||||||| | ||| |||||| ||||||||||| |
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|
| T |
36398314 |
agagaatgatgctcaaagcaccacacatccaaatctaccctttttcagccttaaaacgataatgtcagctacaagatattgcagtcatcagaataagctt |
36398413 |
T |
|
| Q |
136 |
ggacaaggtggatttggctctgtctataaggtaattaagtgcaactctacattgagctact |
196 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||| ||| | ||||||||||||||||| |
|
|
| T |
36398414 |
gggaaaggtggatttggctctgtttataaggtaagtaa----acctctacattgagctact |
36398470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 280 - 384
Target Start/End: Original strand, 36398523 - 36398624
Alignment:
| Q |
280 |
aagagataaaaatttcagggttgcttggttagtggaaaagagattgcagtgaaaagattgttgtccagagattcaggtcaaggaaaagaagagtttaaaa |
379 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||| ||||||| |||||||||||| ||||||| ||| ||||||||||| |||| ||||||||||| |
|
|
| T |
36398523 |
aagagataaaaattgcagggttgcttggttaatggacaagagatagcagtgaaaaga---ttgtccaaagaatcaggtcaaggcaaagtagagtttaaaa |
36398619 |
T |
|
| Q |
380 |
atgaa |
384 |
Q |
| |
|
||||| |
|
|
| T |
36398620 |
atgaa |
36398624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 283 - 385
Target Start/End: Original strand, 36434860 - 36434959
Alignment:
| Q |
283 |
agataaaaatttcagggttgcttggttagtggaaaagagattgcagtgaaaagattgttgtccagagattcaggtcaaggaaaagaagagtttaaaaatg |
382 |
Q |
| |
|
||||| ||||| ||||||||||||| || |||| ||||||| |||||||||||| ||||||| | |||||||||||||||||||||||||||||| || |
|
|
| T |
36434860 |
agatagaaattgcagggttgcttggctaatggacaagagatagcagtgaaaaga---ttgtccaaaaattcaggtcaaggaaaagaagagtttaaaactg |
36434956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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