View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18078_low_25 (Length: 379)

Name: NF18078_low_25
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18078_low_25
NF18078_low_25
[»] chr3 (6 HSPs)
chr3 (18-364)||(34473164-34473510)
chr3 (282-332)||(27630894-27630944)
chr3 (282-332)||(34523513-34523563)
chr3 (282-357)||(34490025-34490101)
chr3 (153-195)||(34528279-34528321)
chr3 (173-267)||(34370725-34370824)
[»] chr6 (1 HSPs)
chr6 (174-259)||(24467767-24467852)
[»] chr5 (2 HSPs)
chr5 (172-260)||(26368743-26368831)
chr5 (18-56)||(26368556-26368594)
[»] chr2 (2 HSPs)
chr2 (173-267)||(10528358-10528452)
chr2 (176-266)||(10535255-10535345)


Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 34473510 - 34473164
Alignment:
Q  18 ctttccctcttccctttatgcttcaactatgcattttttaatttctactttccctcgcgccaaggaaatcaaaataagaaagcatttgggttacattgag 117  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34473510 ctttccctcttccctttatgtttcaactatgcattttttaatttctactttcccccgcgccaaggaaatcaaaataagaaagcatttgggttacattgag 34473411  T
Q  118 tagtaacttgggttacttcaatgcacaatgttcaacccaatgatgccaaaactatgggtttttgaagttattattatttgtctattactctaatttgcac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34473410 tagtaacttgggttacttcaatgcacaatgttcaacccaatgatgccaaaactatgggtttttgaagttattattatttgtctattactctaatttgcac 34473311  T
Q  218 aaaatttagcataaatttgaccgatgaatgtcttccaagtgttcttcatcctggatgttttagttctatataagtaagtacctacctctacctcgtaacc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34473310 aaaatttagcataaatttgaccgatgaatgtcttccaagtgttcttcatcctggatgttttagttctatttaagtaagtacctacctctacctcgtaacc 34473211  T
Q  318 catcaaaccaaaaaatgttttctgttttttacaccttgtactcacag 364  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  34473210 catcaaaccaaaaaatgttttctgttttttacacgttgtactcacag 34473164  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 332
Target Start/End: Complemental strand, 27630944 - 27630894
Alignment:
Q  282 tctatataagtaagtacctacctctacctcgtaacccatcaaaccaaaaaa 332  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||||||||    
T  27630944 tctatatatgtaagtagctacctctaccttgtaacccatcaaaccaaaaaa 27630894  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 332
Target Start/End: Complemental strand, 34523563 - 34523513
Alignment:
Q  282 tctatataagtaagtacctacctctacctcgtaacccatcaaaccaaaaaa 332  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||||||||    
T  34523563 tctatatatgtaagtagctacctctaccttgtaacccatcaaaccaaaaaa 34523513  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 357
Target Start/End: Complemental strand, 34490101 - 34490025
Alignment:
Q  282 tctatataagtaagtacctacctctacctcgtaacccatcaaaccaaaaaatg-ttttctgttttttacaccttgta 357  Q
    |||||||| ||||||| ||||| |||||| ||||||||||||||||||||| | |||||  |||||||| |||||||    
T  34490101 tctatatatgtaagtagctacccctaccttgtaacccatcaaaccaaaaaaagcttttcatttttttacgccttgta 34490025  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 34528321 - 34528279
Alignment:
Q  153 cccaatgatgccaaaactatgggtttttgaagttattattatt 195  Q
    |||||||||||||||| || |||||||||||||||||||||||    
T  34528321 cccaatgatgccaaaattaagggtttttgaagttattattatt 34528279  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 267
Target Start/End: Original strand, 34370725 - 34370824
Alignment:
Q  173 gggtttttgaagttattattatttgtctatt-----actctaatttgcacaaaatttagcataaatttgaccgatgaatgtcttccaagtgttcttcatc 267  Q
    |||| |||||||||||||||||||||||  |     |||| |||||||| ||| || ||  |||||| |||| |||||||| ||||||||||||||||||    
T  34370725 gggtctttgaagttattattatttgtctgctctgctactcaaatttgcataaacttaagtgtaaattcgaccaatgaatgtgttccaagtgttcttcatc 34370824  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 24467767 - 24467852
Alignment:
Q  174 ggtttttgaagttattattatttgtctattactctaatttgcacaaaatttagcataaatttgaccgatgaatgtcttccaagtgt 259  Q
    |||||||||||||||||||||||||||| || || |||||||| ||| |||||  |||||| ||||||||||||| ||||||||||    
T  24467767 ggtttttgaagttattattatttgtctactattcaaatttgcataaactttagtgtaaattcgaccgatgaatgtgttccaagtgt 24467852  T

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Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 172 - 260
Target Start/End: Original strand, 26368743 - 26368831
Alignment:
Q  172 tgggtttttgaagttattattatttgtctattactctaatttgcacaaaatttagcataaatttgaccgatgaatgtcttccaagtgtt 260  Q
    |||||||||||||||||||||||||||||  | ||| ||||| | | ||||||||  ||||||||||| ||||||||||||||||||||    
T  26368743 tgggtttttgaagttattattatttgtctgcttctcaaattttccctaaatttagtgtaaatttgaccaatgaatgtcttccaagtgtt 26368831  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 26368556 - 26368594
Alignment:
Q  18 ctttccctcttccctttatgcttcaactatgcatttttt 56  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  26368556 ctttccctcttccctttaagcttcaagtatgcatttttt 26368594  T

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Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 173 - 267
Target Start/End: Complemental strand, 10528452 - 10528358
Alignment:
Q  173 gggtttttgaagttattattatttgtctattactctaatttgcacaaaatttagcataaatttgaccgatgaatgtcttccaagtgttcttcatc 267  Q
    |||||||||| |||||||||||||||||  ||||| |||||||| ||| |||||  |||||| |||| |||||||| |||||||||||| |||||    
T  10528452 gggtttttgatgttattattatttgtctgctactcaaatttgcataaactttagtgtaaattcgaccaatgaatgtgttccaagtgttcatcatc 10528358  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 176 - 266
Target Start/End: Complemental strand, 10535345 - 10535255
Alignment:
Q  176 tttttgaagttattattatttgtctattactctaatttgcacaaaatttagcataaatttgaccgatgaatgtcttccaagtgttcttcat 266  Q
    |||||||||||||||||||||||||  ||||| |||||||| ||| |||||  |||||| |||| |||||||  |||||||||||||||||    
T  10535345 tttttgaagttattattatttgtctgctactcaaatttgcataaactttagtgtaaattcgaccaatgaatgagttccaagtgttcttcat 10535255  T

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