View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_low_26 (Length: 379)
Name: NF18078_low_26
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 2602034 - 2601675
Alignment:
| Q |
1 |
gttcttcacttttgagatgctcaataaaattcagagatgttaggaaggtatatgcaggtaaaacaaattacatcttaatagttatacttggtttgtactt |
100 |
Q |
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| T |
2602034 |
gttcttcacttttgagatgctcaataaaattcagagatgttaggaaggtatatgcaggtaaaacaaattacatcataatagttatacttggcttgtactt |
2601935 |
T |
|
| Q |
101 |
gtaannnnnnnnacatacaacaacggtgttgtaagggaagaacttaagtatatat--catagaatgaatttaatttgtctttgagttcactggacctaga |
198 |
Q |
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| T |
2601934 |
gtaatttattttacatacaacaacggtgttgtaagggaagaacttaagtatatatatcattgaatgaattt----tgtctttgatttcactggacctgga |
2601839 |
T |
|
| Q |
199 |
aaatctaaaccttattttataactataaaagttttgtcatagatgtgcttatatatgaaaatttttgcaggacggtaattgatttggaaatgaatttatc |
298 |
Q |
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| T |
2601838 |
aaatctaaaccttattttataactatgtaagttttgtcatagatgtgcttatatatgaaaatttttgcaggacggtaattgatttggagatgaatttatc |
2601739 |
T |
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| Q |
299 |
aaagtacaaaatgctcaagggaattggtatttggagatgaaggtggaagatattgagagatgtg |
362 |
Q |
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| T |
2601738 |
aaagtacaaaatgctcaaaggaattggtatttggagatgaaggtagaagatattgagaaatgtg |
2601675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 5 - 361
Target Start/End: Complemental strand, 2615572 - 2615219
Alignment:
| Q |
5 |
ttcacttttgagatgctcaataaaattcagagatgttaggaaggtatatgcaggtaaaacaaattacatcttaatagttatacttggtttgtacttgtaa |
104 |
Q |
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| T |
2615572 |
ttcacttttgagatgctcaacaaaattcagagatgtttggaaggtatatgcaggtaaaacaaattacatcataatagttatacttggtttgtacttgtaa |
2615473 |
T |
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| Q |
105 |
nnnnnnnn-acatacaacaacggtgttgtaagggaagaacttaagtatatatcatagaatgaatttaatttgtctttgagttcactggacctagaaaatc |
203 |
Q |
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| T |
2615472 |
tttttttttacatacaacaacggtgttgtaagggaagaatttaagtatatatcattgaatgaattg----tgtctttgagttcattggacctagaaaatt |
2615377 |
T |
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| Q |
204 |
taaaccttattttataactataaaagttttgtcatagatgtgcttatatatgaaaatttttgcaggacggtaattgatttggaaatgaatttatcaaagt |
303 |
Q |
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| T |
2615376 |
taaaccttattttataactatataagttttgtcataaatgtgcttatatatgaaaatttttgcaggacagtaattgatttggggatgaatttatcaaagt |
2615277 |
T |
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| Q |
304 |
acaaaatgctcaagggaattggtatttggagatgaaggtggaagatattgagagatgt |
361 |
Q |
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| T |
2615276 |
acaaaatgctcaagggaattggtattcggagatgaaggtggaggatattgagagatgt |
2615219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 22193892 - 22194236
Alignment:
| Q |
1 |
gttcttcacttttgagatgctcaataaaattcagagatgttaggaaggtatatgcaggtaaaacaaattacatcttaatagttatacttggtttgtactt |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||| |
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| T |
22193892 |
gttcttcacttttgagatgctcaacaaaattcagagatgttaggaaggtatatgcaggtaaaacgaattacatctaaataattatacttggtttgtactt |
22193991 |
T |
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| Q |
101 |
gtaannnnnnnnacatacaacaacggtgttgtaagggaagaacttaagtatatatcatagaatgaatttaatttgtctttgagttcactggacctagaaa |
200 |
Q |
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| T |
22193992 |
gtaattatttt-------------ggtgttgtaagggaagaatttaagtatatatcattgaatgaattg----tgtctttgagttcaatggacctagaaa |
22194074 |
T |
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| Q |
201 |
atctaaaccttattttataactataaaagttttgtcatagatgtgcttatatatga-aaatttttgcaggacggtaattgatttggaaatgaatttatca |
299 |
Q |
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| T |
22194075 |
atctaaaccttattttataacaatatatgttttgtcatagatgtgcttatatatgatttttttttgcaggacactaattgatttggagatgaatttatca |
22194174 |
T |
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| Q |
300 |
aagtacaaaatgctcaagggaattggtatttggagatgaaggtggaagatattgagagatgt |
361 |
Q |
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| T |
22194175 |
aagtagaaaatgctcaagggaattggtatttggagataaaggtggaagatatttagagatgt |
22194236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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