View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18078_low_27 (Length: 376)

Name: NF18078_low_27
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18078_low_27
NF18078_low_27
[»] chr1 (11 HSPs)
chr1 (21-367)||(4872433-4872761)
chr1 (231-287)||(6326689-6326745)
chr1 (231-288)||(14508749-14508806)
chr1 (232-276)||(12535423-12535467)
chr1 (231-287)||(28239162-28239218)
chr1 (232-287)||(12532934-12532989)
chr1 (231-274)||(28231589-28231632)
chr1 (231-276)||(28326411-28326456)
chr1 (135-187)||(677215-677263)
chr1 (232-298)||(12540654-12540720)
chr1 (231-276)||(47569252-47569297)
[»] chr5 (1 HSPs)
chr5 (231-288)||(1717979-1718036)
[»] chr2 (2 HSPs)
chr2 (231-288)||(9066378-9066435)
chr2 (231-272)||(9068561-9068602)
[»] chr3 (1 HSPs)
chr3 (230-282)||(47924856-47924908)


Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 21 - 367
Target Start/End: Original strand, 4872433 - 4872761
Alignment:
Q  21 gtagcttatgtgagataggtgaaactaaaagagccatccacttgttcagaaagatagagatggatcttaacagccttcacgaatatgttctacaggtaca 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||    
T  4872433 gtagcttatgtgagataggtgaaactaaaagagccatccacttg------------------gatcttaacagccttcacgaatatgttctacaggtaca 4872514  T
Q  121 taatatgcaggctgtgcaaagatagacttgtacgtacatcaagcctatgatttttattctgaaatgactgctaagaatatcagctttggttctactatat 220  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4872515 taatacgcaggctgtgcaaagatagacttgtacgtacatcaagcctatgatttttattctgaaatgactgctaagaatatcagctgtggttctactatat 4872614  T
Q  221 atcgtaatctatctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttaggcaatttgggccagagccaccactttacatcc 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4872615 atcgtaatctatctaatctatggctattgcatcctcggtcaatttaaacaagcaatcaccttctttaggcaatttgggccagagccaccactttacatcc 4872714  T
Q  321 ttccctgtccaagttttaatgttgcccttgcctctgcctttgctact 367  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||    
T  4872715 ttccctgtccaagttttaatgttgcccttgcctctgcttttgttact 4872761  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 6326745 - 6326689
Alignment:
Q  231 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 287  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||    
T  6326745 atctaatctatggctattgcatcctcggtcaatttgaacaagcaattgccttgttta 6326689  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 14508806 - 14508749
Alignment:
Q  231 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 288  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||| ||||| |||||    
T  14508806 atctaatctatggttattgcatcgtcggtcaatttaaacaagcaattgccttgtttag 14508749  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 12535467 - 12535423
Alignment:
Q  232 tctaatctatggctattgcatcctcggtcaatttaaacaagcaat 276  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  12535467 tctaatctatggctattgcatcaccggtcaatttaaacaagcaat 12535423  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 28239162 - 28239218
Alignment:
Q  231 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 287  Q
    ||||| ||||||| |||||||||||||||||||||||||| ||||| | ||||||||    
T  28239162 atctagtctatggttattgcatcctcggtcaatttaaacaggcaattgacttcttta 28239218  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 287
Target Start/End: Complemental strand, 12532989 - 12532934
Alignment:
Q  232 tctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 287  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||| ||||| ||||    
T  12532989 tctaatctatggctattacatcaacggtcaatttaaacaagcaattgccttgttta 12532934  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 274
Target Start/End: Original strand, 28231589 - 28231632
Alignment:
Q  231 atctaatctatggctattgcatcctcggtcaatttaaacaagca 274  Q
    ||||||||||||| |||||||||||||||||||||||| |||||    
T  28231589 atctaatctatggttattgcatcctcggtcaatttaaagaagca 28231632  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 28326411 - 28326456
Alignment:
Q  231 atctaatctatggctattgcatcctcggtcaatttaaacaagcaat 276  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  28326411 atctaatctttggctattgtatcatcggtcaatttaaacaagcaat 28326456  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 677215 - 677263
Alignment:
Q  135 tgcaaagatagacttgtacgtacatcaagcctatgatttttattctgaaatga 187  Q
    |||||||||||||||||||    |||||||||||||||| |||||||||||||    
T  677215 tgcaaagatagacttgtac----atcaagcctatgatttatattctgaaatga 677263  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 298
Target Start/End: Original strand, 12540654 - 12540720
Alignment:
Q  232 tctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttaggcaatttggg 298  Q
    |||| |||||||||||||||||   ||||||||||| |||||||| ||||| |||||  ||||||||    
T  12540654 tctagtctatggctattgcatcactggtcaatttaagcaagcaattgccttgtttagagaatttggg 12540720  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 47569252 - 47569297
Alignment:
Q  231 atctaatctatggctattgcatcctcggtcaatttaaacaagcaat 276  Q
    |||||| |||||| ||||||||||| |||||||| |||||||||||    
T  47569252 atctaacctatggttattgcatcctgggtcaattcaaacaagcaat 47569297  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 288
Target Start/End: Original strand, 1717979 - 1718036
Alignment:
Q  231 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 288  Q
    ||||||||||||| ||||||||| | |||||||||||||||||||| ||||| |||||    
T  1717979 atctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttag 1718036  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 288
Target Start/End: Original strand, 9066378 - 9066435
Alignment:
Q  231 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 288  Q
    ||||||||||||| ||||| ||| ||||||||||||||| |||||| ||||| |||||    
T  9066378 atctaatctatggttattgtatcgtcggtcaatttaaaccagcaattgccttgtttag 9066435  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 9068561 - 9068602
Alignment:
Q  231 atctaatctatggctattgcatcctcggtcaatttaaacaag 272  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  9068561 atctaatctatggctattgcatcgttggtcaatttaaacaag 9068602  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 47924908 - 47924856
Alignment:
Q  230 tatctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgcctt 282  Q
    ||||||||| |||||||||||||| ||||| ||||||||||||| || |||||    
T  47924908 tatctaatcaatggctattgcatcatcggtgaatttaaacaagcgattgcctt 47924856  T

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