View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18078_low_3 (Length: 671)

Name: NF18078_low_3
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18078_low_3
NF18078_low_3
[»] chr4 (1 HSPs)
chr4 (17-657)||(33283472-33284107)
[»] chr6 (7 HSPs)
chr6 (190-504)||(5746703-5747015)
chr6 (294-495)||(31611445-31611647)
chr6 (199-475)||(34092929-34093200)
chr6 (190-228)||(20500294-20500332)
chr6 (539-621)||(34092719-34092801)
chr6 (460-501)||(21029736-21029777)
chr6 (199-228)||(31611657-31611686)
[»] scaffold0127 (1 HSPs)
scaffold0127 (174-504)||(21231-21559)
[»] chr3 (4 HSPs)
chr3 (299-486)||(4637184-4637372)
chr3 (294-497)||(36602060-36602267)
chr3 (188-228)||(31424611-31424651)
chr3 (199-228)||(21152707-21152736)
[»] chr7 (4 HSPs)
chr7 (127-500)||(43344478-43344851)
chr7 (249-452)||(1819729-1819927)
chr7 (543-621)||(43344959-43345037)
chr7 (322-390)||(30663197-30663265)
[»] chr5 (4 HSPs)
chr5 (200-495)||(8987620-8987910)
chr5 (124-228)||(6159828-6159934)
chr5 (540-621)||(8987929-8988010)
chr5 (168-227)||(38642435-38642494)
[»] scaffold0620 (2 HSPs)
scaffold0620 (199-475)||(8263-8534)
scaffold0620 (539-621)||(8053-8135)
[»] chr8 (1 HSPs)
chr8 (299-423)||(17819575-17819700)
[»] chr1 (1 HSPs)
chr1 (188-228)||(2878023-2878063)


Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 17 - 657
Target Start/End: Original strand, 33283472 - 33284107
Alignment:
Q  17 tccctctgcagtcaagactcacaacatatctgaatttccgtcttgtagtattgtannnnnnnnnngttttgaagagtcttgtagtattgtatgttctttg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||| |||||| | |    
T  33283472 tccctctgcagtcaagactcacaacatatctgaatttccgtcttgtagtattgtattttttttt-gttttgaagagtcttgtagtattgcatgttcatcg 33283570  T
Q  117 nnnnnnnaacggtaaaatttattaaaatctcgatccctggttaagacgaagagatcggtaaatcagagattataaagacgttgtatataggcggaacatc 216  Q
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33283571 tttttttaacggtaaaatttattaaaatctcgatccctgcttaagacgaagagatcggtaaatcagagattataaagacgttgtatatagacggaacatc 33283670  T
Q  217 caaaataaacactgataaaaacacgaatacctacatcacctacccaagacctaatttcaacacccatgaaccccatgccactaccaccaaaatcaatttc 316  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     ||||||||||||||||||||    
T  33283671 caaaataaacaccgataaaaacacgaatacctacatcacctatccaagacctaatttcaacacccatgaacccca-----ctaccaccaaaatcaatttc 33283765  T
Q  317 gccgcctaaaacaaactctgtcgcgaacaaccacttaaaacgaaatccataagcacccattgccgctacacactccaaaaaacactcctctaaatcaaac 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33283766 gccgcctaaaacaaactctgtcgcgaacaaccacttaaaacgaaatccataagcacccattgctgctacacactccaaaaaacactcctctaaatcaaac 33283865  T
Q  417 atcctctccaccttaccatggttgagccacacctaagaagacatattccaacactccttcggcttccaccatctctctatccccgatcaccaaagnnnnn 516  Q
    ||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||         
T  33283866 atcctctccacctcaccatggttgagccacacccaaaaagacatattccaacactccttcggcttccaccatctctctatccctgatcaccaaagaaaaa 33283965  T
Q  517 nncaccataagaccgg-cttcagagacaaatcagtaaggcacccctcatctccaatccaccgaagaagatgccataaccaaccgaaccacttgcagctag 615  Q
      |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33283966 aacaccataagaccggccttcagagacaaatcagtaaggcacccctcatctccaatccaccgaagaagatgccataaccaaccgaaccacttgcagctag 33284065  T
Q  616 acactaactaccgatatcgaaaatccagtcatgagtgttttc 657  Q
    ||||||||||||||| ||||||||||| ||||||||||||||    
T  33284066 acactaactaccgatctcgaaaatccattcatgagtgttttc 33284107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 4e-55; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 190 - 504
Target Start/End: Complemental strand, 5747015 - 5746703
Alignment:
Q  190 aaagacgttgtatataggcggaacatccaaaataaacactgataaaaacacgaat-acctacatcacctacccaagacctaatttcaacacccatgaacc 288  Q
    |||| ||| |||||||||||||||| | ||||| ||||   ||||| |||||||| ||  |||||||||||| ||||||||  |||||||||||||||||    
T  5747015 aaaggcgtcgtatataggcggaacacctaaaatgaacatcaataaagacacgaattacacacatcacctacctaagacctaccttcaacacccatgaacc 5746916  T
Q  289 ccatgccactaccaccaaaatcaatttcgccgcctaaaacaaactctgtcgcgaacaaccacttaaaa-cgaaatccataagcacccattgccgctacac 387  Q
    |||     | |||||||||| ||||||| |||||||||||| ||||  |||| |||||||||| |||| | |||||||||||||||||| |||||||| |    
T  5746915 cca-----caaccaccaaaaccaatttcaccgcctaaaacatactccatcgcaaacaaccactgaaaaactaaatccataagcacccatcgccgctactc 5746821  T
Q  388 actccaa-aaaacactcctctaaatcaaacatcctctccaccttaccatggttgagccacacctaagaagacatattccaacactccttcggcttccacc 486  Q
    ||||||| ||||||| |||| |||||||||||||||| ||||| |||||| || ||||||||| || ||    |||||||||||||||||| ||||||||    
T  5746820 actccaaaaaaacacccctccaaatcaaacatcctcttcacctcaccatgattaagccacacccaaaaatttctattccaacactccttcgccttccacc 5746721  T
Q  487 atctctctatccccgatc 504  Q
    | ||||||| ||| ||||    
T  5746720 acctctctacccctgatc 5746703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 294 - 495
Target Start/End: Complemental strand, 31611647 - 31611445
Alignment:
Q  294 ccactaccaccaaaatcaatttcgccgcctaaaacaaactctgtcgcgaacaaccacttaaaacgaaatccataagcacccattgccgctacacactcca 393  Q
    |||| ||||||||||||| |||| |||||||||||||||||  || |||||||||| |  |||||||||||||||||| ||||||||||||| |||||||    
T  31611647 ccacaaccaccaaaatcactttcaccgcctaaaacaaactccatcacgaacaaccaatggaaacgaaatccataagcatccattgccgctactcactcca 31611548  T
Q  394 a-aaaacactcctctaaatcaaacatcctctccaccttaccatggttgagccacacctaagaagacatattccaacactccttcggcttccaccatctct 492  Q
    | ||||||| ||||  ||||||||||||||| |||||  |||||||| ||||||||| || |||    ||||||||||||||||||||| ||| | ||||    
T  31611547 aaaaaacacccctcgcaatcaaacatcctcttcacctccccatggttaagccacacccaaaaagttcaattccaacactccttcggctttcactacctct 31611448  T
Q  493 cta 495  Q
    |||    
T  31611447 cta 31611445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 199 - 475
Target Start/End: Complemental strand, 34093200 - 34092929
Alignment:
Q  199 gtatataggcggaacatccaaaataaacactgataaaaacacgaa-tacctacatcacctacccaagacctaatttcaacacccatgaaccccatgccac 297  Q
    ||||||| || ||| | |||||||||||||  ||||| |||| || |||  |||||||| ||| |||||||   |||||||||||||||||| |     |    
T  34093200 gtatataagctgaatacccaaaataaacaccaataaagacacaaaatacacacatcacccacctaagacctgccttcaacacccatgaacccta-----c 34093106  T
Q  298 taccaccaaaatcaatttcgccgcctaaaacaaactctgtcgcgaacaaccacttaaaacgaaatccataagcacccattgccgctacacactccaaa-a 396  Q
     ||||| |||||||||||| ||||||||||||| |||  || | || |||||| | |||| ||||||| |||||||||| |||||||| ||||||||| |    
T  34093105 aaccac-aaaatcaatttcaccgcctaaaacaatctccatcac-aataaccacctgaaacaaaatccacaagcacccatcgccgctactcactccaaaga 34093008  T
Q  397 aacactcctctaaatcaaacatcctctccaccttaccatggttgagccacacctaagaagacatattccaacactcctt 475  Q
    ||||| ||||  ||||||||||||||| |||||  |||||||| | ||||||| |  ||| |||||||||||| |||||    
T  34093007 aacacccctcgcaatcaaacatcctcttcacctccccatggttaaaccacacccacaaagtcatattccaacagtcctt 34092929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 20500332 - 20500294
Alignment:
Q  190 aaagacgttgtatataggcggaacatccaaaataaacac 228  Q
    ||||| ||||||||||||||||||| |||||||||||||    
T  20500332 aaagatgttgtatataggcggaacacccaaaataaacac 20500294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 539 - 621
Target Start/End: Complemental strand, 34092801 - 34092719
Alignment:
Q  539 agacaaatcagtaaggcacccctcatctccaatccaccgaagaagatgccataaccaaccgaaccacttgcagctagacacta 621  Q
    |||||||||||||| | ||| ||||||||||||||   ||||||||   |||||||| || ||||||||| ||||| ||||||    
T  34092801 agacaaatcagtaatgtacctctcatctccaatccgtagaagaagacatcataaccagccaaaccacttgtagctaaacacta 34092719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 501
Target Start/End: Complemental strand, 21029777 - 21029736
Alignment:
Q  460 tattccaacactccttcggcttccaccatctctctatccccg 501  Q
    ||||||||||||| |||||||||||||| ||||||| |||||    
T  21029777 tattccaacactcattcggcttccaccacctctctacccccg 21029736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 228
Target Start/End: Complemental strand, 31611686 - 31611657
Alignment:
Q  199 gtatataggcggaacatccaaaataaacac 228  Q
    ||||||||||||||||||||||||||||||    
T  31611686 gtatataggcggaacatccaaaataaacac 31611657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 174 - 504
Target Start/End: Original strand, 21231 - 21559
Alignment:
Q  174 gtaaatcagagattataaagacgttgtatataggcggaacatccaaaataaacactgataaaaacacgaat-acctacatcacctacccaagacctaatt 272  Q
    |||||||||||| || ||||  || |||||||||||||||| ||||||| ||||   ||||| |||||||| ||  || ||||||||| ||||||||  |    
T  21231 gtaaatcagagactacaaaggtgtcgtatataggcggaacacccaaaatgaacatcaataaagacacgaattacacacgtcacctacctaagacctacct 21330  T
Q  273 tcaacacccatgaaccccatgccactaccaccaaaatcaatttcgccgcctaaaacaaactctgtcgcgaacaaccacttaaaa-cgaaatccataagca 371  Q
    |||||||||||||||||||     | |||||||||| ||||||| |||||||||||| ||||  |||| ||||||| || |||| | |||||||||||||    
T  21331 tcaacacccatgaacccca-----caaccaccaaaaccaatttcaccgcctaaaacatactccatcgcaaacaaccgctgaaaaactaaatccataagca 21425  T
Q  372 cccattgccgctacacactcc-aaaaaacactcctctaaatcaaacatcctctccaccttaccatggttgagccacacctaagaagacatattccaacac 470  Q
    ||||| |||||||| |||||| ||||||||| |||| |||||||| ||||||| ||||| |||||| || ||||||||| || ||    |||||||||||    
T  21426 cccatcgccgctactcactccaaaaaaacacccctccaaatcaaatatcctcttcacctcaccatgattaagccacacccaaaaatttctattccaacac 21525  T
Q  471 tccttcggcttccaccatctctctatccccgatc 504  Q
    ||||||| ||||||||| ||||||| ||| ||||    
T  21526 tccttcgccttccaccacctctctacccctgatc 21559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 299 - 486
Target Start/End: Original strand, 4637184 - 4637372
Alignment:
Q  299 accaccaaaatcaatttcgccgcctaaaacaaactctgtcgcgaacaaccacttaaaa-cgaaatccataagcacccattgccgctacacactccaaaaa 397  Q
    |||||||||| ||||||| || ||||||||||||||  ||||  ||| || || |||| | ||||  ||||||| |||| |||||||| ||||||| |||    
T  4637184 accaccaaaaccaatttcacctcctaaaacaaactccatcgcagacatcccctaaaaaacaaaattaataagcatccatcgccgctactcactccacaaa 4637283  T
Q  398 acactcctctaaatcaaacatcctctccaccttaccatggttgagccacacctaagaagacatattccaacactccttcggcttccacc 486  Q
    |||| ||||||||||||||||||||| ||||| |||||| || ||||||||| || ||| | |||||||||||||||||||||||||||    
T  4637284 acacccctctaaatcaaacatcctcttcacctcaccatgattaagccacacccaaaaagtcctattccaacactccttcggcttccacc 4637372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 294 - 497
Target Start/End: Original strand, 36602060 - 36602267
Alignment:
Q  294 ccactaccaccaaaatcaatttcgccgcctaaaacaaactctgtcgcgaacaaccacttaaaacgaaatccataagcacccattgccgctacacactcca 393  Q
    |||| |||||||| | ||||||| ||| |||||||||||||   || ||||||||||  ||||| |||| ||||| ||||||| |||||||| |||||||    
T  36602060 ccacaaccaccaagaccaatttcaccgtctaaaacaaactccaccgtgaacaaccaccgaaaacaaaattcataaccacccatcgccgctactcactcca 36602159  T
Q  394 a---aaaacactcctctaaatcaaacatcctctccacct-taccatggttgagccacacctaagaagacatattccaacactccttcggcttccaccatc 489  Q
    |   ||||||| ||||  |||||| |||||||| |||||   |||||||| ||||||||| || ||| |  |||||||||||| |||||||||||  |||    
T  36602160 aaataaaacacccctcgcaatcaaccatcctcttcacctcctccatggttaagccacacccaaaaagtctaattccaacactctttcggcttccattatc 36602259  T
Q  490 tctctatc 497  Q
    ||||||||    
T  36602260 tctctatc 36602267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 31424651 - 31424611
Alignment:
Q  188 ataaagacgttgtatataggcggaacatccaaaataaacac 228  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  31424651 ataaagacgtcgtatataggcggaacatccaaattaaacac 31424611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 228
Target Start/End: Original strand, 21152707 - 21152736
Alignment:
Q  199 gtatataggcggaacatccaaaataaacac 228  Q
    ||||||||||||||||||||||||||||||    
T  21152707 gtatataggcggaacatccaaaataaacac 21152736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 127 - 500
Target Start/End: Original strand, 43344478 - 43344851
Alignment:
Q  127 ggtaaaatttattaaaatctcgatccctggttaagacgaa--gagatcggtaaatcagagattataaagacgttgtatataggcggaacatccaaaataa 224  Q
    ||||||||||||| ||| ||||||||||| | ||||||||  |||| ||||||| |||||| || |||   |  |||||||||||||| |  ||||||||    
T  43344478 ggtaaaatttatttaaaactcgatccctgctcaagacgaatagagaccggtaaaccagagactacaaatgtgccgtatataggcggaaaactcaaaataa 43344577  T
Q  225 acactgataaaaacacgaa-tacctacatcacctacccaagacctaatttcaacaccca-tgaaccccatgccactaccaccaaaatcaatttcgccgcc 322  Q
    ||||  ||||| |||| || |||  || ||||||||| |||||||   ||||||||||| |||||||||     | ||||| || | ||||  | |||||    
T  43344578 acaccaataaagacacaaaatacacacgtcacctacctaagacctgccttcaacacccaatgaacccca-----caaccacaaacaccaataccaccgcc 43344672  T
Q  323 taaaacaaactctgtcgcgaacaaccacttaaaacgaaatccataagcacccattgccgctacacactcc--aaaaaacactcctctaaatcaaacatcc 420  Q
    ||||||||||||  ||| ||||||||||  ||||||||||| |||||||||||| |||||||| | ||||  |||||||||  |||  ||||||||||||    
T  43344673 taaaacaaactccatcgtgaacaaccaccaaaaacgaaatctataagcacccatcgccgctactcgctccagaaaaaacacctctcacaatcaaacatcc 43344772  T
Q  421 tctccaccttaccatggttgagccacacctaagaagacatattccaacactccttcggcttccaccatctctctatcccc 500  Q
    ||| || ||| || ||||| ||||||||| || |||  ||||||||||||||| | || |||||||| ||||||| ||||    
T  43344773 tcttca-cttgccctggttaagccacacccaaaaagttatattccaacactccattggtttccaccacctctctaccccc 43344851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 249 - 452
Target Start/End: Original strand, 1819729 - 1819927
Alignment:
Q  249 acatcacctacccaagacctaatttcaacacccatgaaccccatgccactaccaccaaaatcaatttcgccgcctaaaacaaactctgtcgcgaacaacc 348  Q
    |||||||||||  ||||||||  |||||||||||||||||||||      ||||| |||| ||||||| |  ||||||||||||||   ||| |||||||    
T  1819729 acatcacctacttaagacctaccttcaacacccatgaaccccata-----accacaaaaaccaatttcactacctaaaacaaactccaacgcaaacaacc 1819823  T
Q  349 acttaaaacgaaatccataagcacccattgccgctacacactccaaaaaacactcctctaaatcaaacatcctctccaccttaccatggttgagccacac 448  Q
    | |  |||||||||||||||  |||||| |||||||| |||||||||||| | |||||  ||||||||||||||| |||||  |||||||| ||||||||    
T  1819824 attggaaacgaaatccataaatacccatcgccgctactcactccaaaaaaaagtcctcgcaatcaaacatcctcttcacctccccatggttaagccacac 1819923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 543 - 621
Target Start/End: Original strand, 43344959 - 43345037
Alignment:
Q  543 aaatcagtaaggcacccctcatctccaatccaccgaagaagatgccataaccaaccgaaccacttgcagctagacacta 621  Q
    |||||| ||||| |||||||||| || |||||||||||||||  |||||||||||||||||||||||| ||| ||||||    
T  43344959 aaatcaataaggtacccctcatccccgatccaccgaagaagacaccataaccaaccgaaccacttgcaactaaacacta 43345037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 322 - 390
Target Start/End: Complemental strand, 30663265 - 30663197
Alignment:
Q  322 ctaaaacaaactctgtcgcgaacaaccacttaaaacgaaatccataagcacccattgccgctacacact 390  Q
    |||||||||||||  | || |||||||||| ||||| |||||||||||||||||| |||||||| ||||    
T  30663265 ctaaaacaaactccatagcaaacaaccactaaaaacaaaatccataagcacccatcgccgctactcact 30663197  T

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Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 200 - 495
Target Start/End: Original strand, 8987620 - 8987910
Alignment:
Q  200 tatataggcggaacatccaaaataaacactgataaaaacacgaa-tacctacatcacctacccaagacctaatttcaacacccatgaaccccatgccact 298  Q
    |||||| |||||||| |||||||||||||  ||||| ||||||| |||  ||| |||| ||| ||||||||  ||||||||||||||||||||     |     
T  8987620 tatatatgcggaacacccaaaataaacaccaataaagacacgaaatacacacagcacccacctaagacctaccttcaacacccatgaacccca-----cc 8987714  T
Q  299 accaccaaaatcaatttcgccgcctaaaacaaactctgtcgcgaacaaccacttaaaacgaaatccataagcacccattgccgctacacactccaaa-aa 397  Q
    |||||||||| ||||||| |||||||||  ||||||| || | ||||||||||| ||||||||||||||| ||| ||| |||||||| ||||||||| ||    
T  8987715 accaccaaaaccaatttcaccgcctaaag-aaactctatccc-aacaaccacttgaaacgaaatccataaccactcatcgccgctactcactccaaagaa 8987812  T
Q  398 acactcctctaaatcaaacatcctctccaccttaccatggttgagccacacctaagaagacatattccaacactccttcggcttccaccatctctcta 495  Q
    ||||  | |  ||||||||||||||| || ||  |||||||| | ||||||| || ||| | ||||  |||||||||| ||||| ||| | |||||||    
T  8987813 acacctcgcgcaatcaaacatcctcttcatctccccatggttaaaccacacccaaaaagtcctatttgaacactcctttggctttcactacctctcta 8987910  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 228
Target Start/End: Complemental strand, 6159934 - 6159828
Alignment:
Q  124 aacggtaaaatttattaaaatctcgatccctggttaagacga--agagatcggtaaatcagagattataaagacgttgtatataggcggaacatccaaaa 221  Q
    ||||| ||| |||||||||| ||||||||||  | |||||||  ||||||  || ||||||||| || |||| || ||||||||||||||||| ||||||    
T  6159934 aacggcaaattttattaaaaactcgatccctactcaagacgagcagagattagtgaatcagagactacaaaggcgctgtatataggcggaacacccaaaa 6159835  T
Q  222 taaacac 228  Q
    |||||||    
T  6159834 taaacac 6159828  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 540 - 621
Target Start/End: Original strand, 8987929 - 8988010
Alignment:
Q  540 gacaaatcagtaaggcacccctcatctccaatccaccgaagaagatgccataaccaaccgaaccacttgcagctagacacta 621  Q
    ||||||||| ||||| ||||||||||| |||||| ||||||||||   |||||||| || |||||||| ||||| |||||||    
T  8987929 gacaaatcaataaggtacccctcatcttcaatccgccgaagaagacatcataaccagccaaaccacttacagcttgacacta 8988010  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 38642494 - 38642435
Alignment:
Q  168 agatcggtaaatcagagattataaagacgttgtatataggcggaacatccaaaataaaca 227  Q
    |||||| ||||||||||| ||||||||  ||||||||||| |||||||  ||||||||||    
T  38642494 agatcgataaatcagagactataaagatattgtatataggtggaacatttaaaataaaca 38642435  T

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Target: scaffold0620 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 199 - 475
Target Start/End: Complemental strand, 8534 - 8263
Alignment:
Q  199 gtatataggcggaacatccaaaataaacactgataaaaacacgaa-tacctacatcacctacccaagacctaatttcaacacccatgaaccccatgccac 297  Q
    ||||||| || ||| | |||||||||||||  ||||| |||| || |||  |||||||| ||| |||||||   |||||||||||||||||| |     |    
T  8534 gtatataagctgaatacccaaaataaacaccaataaagacacaaaatacacacatcacccacctaagacctgccttcaacacccatgaacccta-----c 8440  T
Q  298 taccaccaaaatcaatttcgccgcctaaaacaaactctgtcgcgaacaaccacttaaaacgaaatccataagcacccattgccgctacacactccaaa-a 396  Q
     ||||| |||||||||||| ||||||||||||| |||  || | || |||||| | |||| ||||||| |||||||||| |||||||| ||||||||| |    
T  8439 aaccac-aaaatcaatttcaccgcctaaaacaatctccatcac-aataaccacctgaaacaaaatccacaagcacccatcgccgctactcactccaaaga 8342  T
Q  397 aacactcctctaaatcaaacatcctctccaccttaccatggttgagccacacctaagaagacatattccaacactcctt 475  Q
    ||||| ||||  ||||||||||||||| |||||  |||||||| | ||||||| |  ||| |||||||||||| |||||    
T  8341 aacacccctcgcaatcaaacatcctcttcacctccccatggttaaaccacacccacaaagtcatattccaacagtcctt 8263  T

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Target: scaffold0620; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 539 - 621
Target Start/End: Complemental strand, 8135 - 8053
Alignment:
Q  539 agacaaatcagtaaggcacccctcatctccaatccaccgaagaagatgccataaccaaccgaaccacttgcagctagacacta 621  Q
    |||||||||||||| | ||| ||||||||||||||   ||||||||   |||||||| || ||||||||| ||||| ||||||    
T  8135 agacaaatcagtaatgtacctctcatctccaatccgtagaagaagacatcataaccagccaaaccacttgtagctaaacacta 8053  T

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Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 299 - 423
Target Start/End: Original strand, 17819575 - 17819700
Alignment:
Q  299 accaccaaaatcaatttcgccgcctaaaacaaactctgtcgcgaacaaccacttaaaacgaaatccataagcacccattgc-cgctacacactccaaaaa 397  Q
    |||||||||| ||| ||| || |||||| |||||||  |||| |||||||||| |||||||||||||||| | ||| | || |||| | ||| |||||||    
T  17819575 accaccaaaaccaacttcaccacctaaatcaaactccatcgcaaacaaccactgaaaacgaaatccataaacccccttcgctcgctgctcaccccaaaaa 17819674  T
Q  398 acactcctctaaatcaaacatcctct 423  Q
    | |||||||||||||||||| |||||    
T  17819675 aaactcctctaaatcaaacaacctct 17819700  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 2878063 - 2878023
Alignment:
Q  188 ataaagacgttgtatataggcggaacatccaaaataaacac 228  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  2878063 ataaaggcgttgtatataggcggaacatctaaaataaacac 2878023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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