View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_low_30 (Length: 365)
Name: NF18078_low_30
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 130 - 355
Target Start/End: Complemental strand, 25500739 - 25500514
Alignment:
| Q |
130 |
taacgcttttataaaatgacctcgagaattcctaatacacataccaaaaccaaaacagcgttgttcaccgaaaattgcagcatcaatattgcatttgaca |
229 |
Q |
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| T |
25500739 |
taacgcttttataaaatgacctcgagaattcctaatacacataccaaaaccaaaacagcgttgttcaccgaaaattgtagcatcaatattgcatttgaca |
25500640 |
T |
|
| Q |
230 |
taatcttcctccgtataattctgcatatgtcgcaacctgtttttgttgaactgttttctctcaaacaacctgccactgcttaagaacctcgcgcgctaaa |
329 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
25500639 |
taatcttcctctgtataattctgcatctgtcgcaacctgtttttgctgaactgttttctcttgaacaacctgccactgcttaagaacctctcgcgctaaa |
25500540 |
T |
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| Q |
330 |
tacacagccatctgcacatctttcat |
355 |
Q |
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|||||||||||||||||||||||||| |
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| T |
25500539 |
tacacagccatctgcacatctttcat |
25500514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 25501508 - 25501447
Alignment:
| Q |
70 |
cagttaatctatcttaaaaaattcattaaaaccctaaatttgaagagactgttgccttgcta |
131 |
Q |
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| T |
25501508 |
cagttaatctatcttaaaaaattcattaaaaccctaaatttgaagagactgttgccttgcta |
25501447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 25501577 - 25501548
Alignment:
| Q |
1 |
cattcttccctcttcttctttcatgaacaa |
30 |
Q |
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| T |
25501577 |
cattcttccctcttcttctttcatgaacaa |
25501548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 130 - 240
Target Start/End: Complemental strand, 52176329 - 52176219
Alignment:
| Q |
130 |
taacgcttttataaaatgacctcgagaattcctaatacacataccaaaaccaaaacagcgttgttcaccgaaaattgcagcatcaatattgcatttgaca |
229 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
52176329 |
taacacttttataaaatgaccttgagaattcctaatacacataccaaaaccaaaacaccgttgttcaccgaaaattgctgcatcaatattgcatttgacg |
52176230 |
T |
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| Q |
230 |
taatcttcctc |
240 |
Q |
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|||||||||| |
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| T |
52176229 |
caatcttcctc |
52176219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 355
Target Start/End: Complemental strand, 52176172 - 52176093
Alignment:
| Q |
276 |
tgaactgttttctctcaaacaacctgccactgcttaagaacctcgcgcgctaaatacacagccatctgcacatctttcat |
355 |
Q |
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||||| |||||||| | |||| |||||| || || ||||||||||||||||||| |||||||| | ||||||||||||| |
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| T |
52176172 |
tgaaccgttttctcccgaacagtctgccattgtttcagaacctcgcgcgctaaatgcacagccagccgcacatctttcat |
52176093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 6508358 - 6508466
Alignment:
| Q |
132 |
acgcttttataaaatgacctcgagaattcctaatacacataccaaaaccaaaacagcgttgttcaccgaaaattgcagcatcaatattgcatttgacata |
231 |
Q |
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|||||||||| |||||||| ||||| |||| ||| |||||||| | ||||||||| |||||||||| |||| || ||||| || ||||||||||| || |
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| T |
6508358 |
acgcttttatgaaatgaccacgagagttccaaatgcacataccgataccaaaacacagttgttcaccaaaaagggctgcatcgatgttgcatttgacgta |
6508457 |
T |
|
| Q |
232 |
atcttcctc |
240 |
Q |
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||||||||| |
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|
| T |
6508458 |
atcttcctc |
6508466 |
T |
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