View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18078_low_31 (Length: 359)
Name: NF18078_low_31
Description: NF18078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18078_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 340
Target Start/End: Original strand, 9221996 - 9222324
Alignment:
| Q |
11 |
cagagacaagaacttgacaagataagttagtttaatattcaaaacttgaaataatccgaataattatttggtcnnnnnnnnnnnnnnnnttctcctattc |
110 |
Q |
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| T |
9221996 |
cagagacaagaacttgacaagataagttagtttaatattcaaaacttgaaataatccgaataattatttggtcaaaaaaatccaaaaaattctcctattc |
9222095 |
T |
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| Q |
111 |
aagaaagacgatcacaccaatcccatacaagtacaattattgcaagcagacaaacccaaaaccacaccatcgcgaccatggtttccttaaccaataacca |
210 |
Q |
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| T |
9222096 |
aagaaagacgatcacaccaatcccatacaagtacaattattgcaagcagacaaacacaaa-ccacactatcgcgaccatggtttccttaaccaataacca |
9222194 |
T |
|
| Q |
211 |
taattaaaatcaaaacaaacacgattaactaacgcgtaaaccatatccatccaaatcgtaccatcgtacggctaggatcgcatctgcgtacttatctgca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9222195 |
taattaaaatcaaaacaaacacgattaactaacgcgtaaaccatatccatccaaatcgtaccatcgtacggctaggatcgcatctgcgtacttatctgca |
9222294 |
T |
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| Q |
311 |
tgcagtccaagataactcccatgtagaccc |
340 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
9222295 |
tgcagtccaagataactcccatgtagaccc |
9222324 |
T |
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